Protein Info for TX73_023715 in Rhodopseudomonas palustris CGA009

Annotation: GGDEF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 204 to 363 (160 residues), 132.2 bits, see alignment E=7.6e-43 PF00990: GGDEF" amino acids 206 to 359 (154 residues), 144.3 bits, see alignment E=1.5e-46

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4565)

Predicted SEED Role

"diguanylate cyclase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>TX73_023715 GGDEF domain-containing protein (Rhodopseudomonas palustris CGA009)
MTANSKIANAVYIEFVRLLYTARWPIVVVGCAMLTTGLAVAWQTRDVMMAVIGLTGMAVT
LGRLALCFAFDHAVAKRPLDVETAKRWERRLAVGVISTGVCVGAFAVRCFLLSDLAAHMI
AGGLVFGYCAGTTTRFSIRPWIVQASLVVSVTPAVGAALWNFDLLHVAQAVLFLLFALGG
LELIDYIHATTAEQLTLRAEATRLARADALTNLPNRRHLVEHFNELAKRLARHGESFAVI
SLDLDFFKEANDRFGHAAGDEILRIVAGRMTDLLADDDLAARIGGDEFVVVQANVSDAAE
ADDLGRRIVAALSEPYAIAGEAVMLGASFGRALAPADGVTLDELLHKADEALYAVKRNRP
GRVREVASGADHAPLVPAIDTLPEHDQTAPAMRPTNADAG