Protein Info for TX73_023425 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 transmembrane" amino acids 44 to 66 (23 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 306 (18 residues), see Phobius details amino acids 312 to 338 (27 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 342 (325 residues), 107 bits, see alignment E=1.5e-34 amino acids 230 to 413 (184 residues), 53 bits, see alignment E=4.1e-18 PF12832: MFS_1_like" amino acids 18 to 378 (361 residues), 58.8 bits, see alignment E=8e-20

Best Hits

Swiss-Prot: 64% identical to Y2456_MYCTO: Uncharacterized MFS-type transporter MT2531 (MT2531) from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4511)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (421 amino acids)

>TX73_023425 MFS transporter (Rhodopseudomonas palustris CGA009)
MPPSPSQTLARPLDALNFFLADVRDGLGPYLAIYLLAVQNWNEASIGLVMSIAAAAGIAA
QTPAGALIDRSTAKRALIIAAALVVTAASVVLPWLDSFVLVAATQALAAAAGAIFAPAVA
ALTLGIVGPRAFARRTGRNEAFNHAGNAVAAMLAGAFAYGFGPGVVFWLMAAMALASIFA
TLAIPAAAIDDHVARGLGDDHERGAHHDQPSGFKVLLTCRPLLIFAGATVLFHFANAAML
PLVGQKLALVNKNLGTTLMSVCIVAAQLVMVPVAALVGHKADVWGRKPIFAVALAVLALR
GALYPLSDNPYWLVGVQLLDGVGAGIFGALFPLVVADLTHGTGHFNISQGAIATAAGLGA
ALSTGFAGLIVVSAGYSAAFLALAGIAAAALVLFLVLMPETRQQQSAAPPSAAPEAVSST
V