Protein Info for TX73_022510 in Rhodopseudomonas palustris CGA009

Annotation: excinuclease ABC subunit UvrB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1011 TIGR00631: excinuclease ABC subunit B" amino acids 200 to 858 (659 residues), 1004.4 bits, see alignment E=1e-306 PF04851: ResIII" amino acids 206 to 333 (128 residues), 50.2 bits, see alignment E=8.9e-17 PF00270: DEAD" amino acids 212 to 278 (67 residues), 24.2 bits, see alignment 7.5e-09 PF17757: UvrB_inter" amino acids 355 to 444 (90 residues), 111.6 bits, see alignment E=4.6e-36 PF00271: Helicase_C" amino acids 634 to 740 (107 residues), 69.3 bits, see alignment E=1e-22 PF12344: UvrB" amino acids 747 to 788 (42 residues), 78.9 bits, see alignment (E = 6e-26) PF02151: UVR" amino acids 826 to 859 (34 residues), 35.2 bits, see alignment (E = 2.2e-12)

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit B" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1011 amino acids)

>TX73_022510 excinuclease ABC subunit UvrB (Rhodopseudomonas palustris CGA009)
MAKTPDKPGKPAKTPKSKAHRPDVKPIGPALAELLNPALNRGDAGLGSGTGLQPPPDNSR
DRRTGGEAAVHRGRASTPNPGDGATPRPTALQPYPQPPGASRGGLNEAPQANYGTAATIP
TLDPELARQLGLPTEEDDAEALARPPRSKMEALGVKATAEALESLIRDGRPEFKGEDGGV
KLWVPHRPPRPEKSEGGVRFVLKSDYQPRGDQPTAIKELVEGIDRNDRTQVLLGVTGSGK
TYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRT
DTYIEKDSSINEQIDRMRHAATRALLERDDVIIVASVSCIYGIGSVETYTAMTFALKRGE
RIDQRQLIADLVALQYKRTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVKMFGDEIEGIE
EFDPLTGHKQDELEFVKIYANSHYVTPRPTLIQAIQSIKTELKWRLDQLHAQGRLLEAQR
LEQRTTFDIEMMEATGSCAGIENYSRYLTGRRPGEPPPTLFEYVPDNALVFADESHVSIP
QIGAMFKGDFRRKATLAEYGFRLPSCMDNRPLRFEEWDMMRPPTVAVSATPAAWELNESG
GVFVEQVIRPTGLIDPPVDIRPARTQVDDLVGEVRATAARGYRTLITVLTKRMAEDLTEF
LHEQGIRVRYMHSDIDTIERIEIIRDLRLGAFDALVGINLLREGLDIPECALVAILDADK
EGFLRSETSLIQTIGRAARNVDGKVILYADQMTGSMQRSIDETNRRREKQIEYNTAHGIT
PESVKKSIGDILNSVYERDHVLVEIGDGKGAGFTDDAAVIGHNFEAVLADLETRMREAAA
DLNFEEAARLRDEVKRLRATELAVIDDPTVKQRKVADKAGSYAGAKRYGDAANLPADAGK
GGRGKSGSRGGAATSPSPLRGGSAEGRGGGAVSTASKVHKPDLDEMGIAGFHEFKKVQRP
KPRKPTLDEMGPGTESKIYQPTSSREAGPEFGPSPRSTGGAPGKRGGWKKR