Protein Info for TX73_021795 in Rhodopseudomonas palustris CGA009

Annotation: lipopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 417 to 438 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 36 to 295 (260 residues), 55.5 bits, see alignment E=6.3e-19 PF14667: Polysacc_synt_C" amino acids 363 to 446 (84 residues), 50.4 bits, see alignment E=2.7e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_4685)

Predicted SEED Role

"InterPro IPR002797 COGs COG2244"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>TX73_021795 lipopolysaccharide biosynthesis protein (Rhodopseudomonas palustris CGA009)
MDSPPAATSLAALRARLTSLFGGSNEASLTNRLAGTIFLIRVVSAGLAYGAQILLARWMG
GSDYGIYVYVWTWVLLLGSMLDFGISASAQKIIPEYRARGELDRLRGFLSGSRWGTLAAS
SVVSLLLAALVWALSPLIGDATVIPLYLGCLTLPAFVVANTQDGIARSHDWMRLGLMPQF
IIRQALIIGFTAGLFVLGFELGAVAAMAASCAAVWIAMLGQMIALNRRLAGHVPPGPRAY
DVRGWLATSLPILLVESFYLLLSYTDVLVLQQFSTPEEVGIYYAVVKTLALVSFIHYAMS
ATTAHRFTEYNAAGDKVRLAAYVRHAIVWTFWPSLVATLALLALGEPLLWLFGPQFTSGY
GIMFVAAIGLMVRAAIGPVERLLNMLGHQHVCALAYALAFAVNLALCLILVPRFGGYGAA
AATSAALTFETVMLFWIVRKRLGLHVLAFGSKG