Protein Info for TX73_021715 in Rhodopseudomonas palustris CGA009

Annotation: DUF882 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF05951: Peptidase_M15_2" amino acids 29 to 178 (150 residues), 217.4 bits, see alignment E=8e-69 PF08291: Peptidase_M15_3" amino acids 79 to 171 (93 residues), 33.8 bits, see alignment E=3.5e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4189)

Predicted SEED Role

"protein of unknown function DUF882"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>TX73_021715 DUF882 domain-containing protein (Rhodopseudomonas palustris CGA009)
MPMAGYGAVLTTALLLAGAGSVHDASAVGDSRTLSFHHTHSGESLTVTFKRSGRYDEDAL
KQLNHFLRDWRSQEQTVMDRQLFDILWEVYRDVDAKQPIQIISAYRSPATNAMLRRRSSG
VARHSQHMQGHAMDFFIPGVALEQIRFAGLRLQRGGVGFYPTSGSPFVHLDTGGIRHWPR
MTPDQLARVFPDGRTVHIPTNGKPLRGYELALADIEKRRDGSTVAPAKTNFLATLFGGKS
RDDEDETAATAAPSGAKPMADIKVAAADAVAAAAGMKPADVGSSDPVPMPRAKPAAAIQI
ASAGDVVLPAPRPAQAAKAEAKTAEPKTAESKTADAKLQSPADIINARGFWDDIPVAPKQ
ASPAQVAAISARQALAAADKSEQATAMNALAYAPMAQENSSKHAPTRHPHVVTASAPLPP
TRASLQRQAAVSGKVDSVIGKSSGQGKTVIATSARLAAAGSRDNDVWIRAMILMPRAMHT
AATVIGDPDMTLLSGYLAKPEATLATSFADDPQPGLYADAFSGSAVATLTTTAFPGDASR