Protein Info for TX73_021695 in Rhodopseudomonas palustris CGA009

Annotation: M3 family oligoendopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 TIGR02290: oligoendopeptidase, pepF/M3 family" amino acids 53 to 637 (585 residues), 659.3 bits, see alignment E=3.6e-202 PF08439: Peptidase_M3_N" amino acids 161 to 229 (69 residues), 70.3 bits, see alignment E=1.3e-23 PF01432: Peptidase_M3" amino acids 381 to 621 (241 residues), 132.2 bits, see alignment E=3.6e-42

Best Hits

KEGG orthology group: K08602, oligoendopeptidase F [EC: 3.4.24.-] (inferred from 100% identity to rpa:RPA4185)

Predicted SEED Role

"Oligoendopeptidase F (EC 3.4.24.-)" (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (638 amino acids)

>TX73_021695 M3 family oligoendopeptidase (Rhodopseudomonas palustris CGA009)
MAKSATSRTAKTSSRKSTPAKPAPRKAAPSKAKAAKTAAAGRKAAAKPAKLPEWNLMDLY
PAIGSPEVAADLDRLDAECASFEADFKGRLAEETAKDGGALWLAGAVKRYEAIEDLAGRL
GSYAGLVHAGDSVDPVKSKFYGDVSERLTAASVHLLFFTLELNRVDDAVLETAMQTPELG
HYRPWIEDLRKDKPYQLEDRIEQLFHEKSQTGYGAFNRLFDQTISSLRFRVGGKELAIEP
TLNLMQDRAPAKRKVAAEALAKTFKANERTFALITNTLAKDKEISDRWRGFEDVADSRHL
ANRVEREVVDALVASVRAAYPKLSHRYYKLKAGWFKKKKLPYWDRNAPLPFAATGSIAWP
DARNMVLTAYKAFSPEMAQIAERFFTDRWIDAPVRPGKAPGAFSHPTTPSAHPYVLMNYQ
GKPRDVMTLAHELGHGVHQVLAAKNGALMAPTPLTLAETASVFGEMLTFRRLLTQTKDRK
QRQALLAGKVEDMINTVVRQIAFYSFERAVHTERRSGELTAQRIGEIWLSVQGESLGPAI
EIKPGYESFWMYIPHFIHSPFYVYAYAFGDCLVNSLYAVYEHAQEGFAERYLAMLAAGGT
KHYSELLAPFGLDAKNPSFWDGGLSVIAGMIDELEAMG