Protein Info for TX73_021170 in Rhodopseudomonas palustris CGA009

Annotation: ribosome-associated ATPase/putative transporter RbbA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 931 transmembrane" amino acids 579 to 600 (22 residues), see Phobius details amino acids 709 to 725 (17 residues), see Phobius details amino acids 734 to 759 (26 residues), see Phobius details amino acids 786 to 809 (24 residues), see Phobius details amino acids 815 to 837 (23 residues), see Phobius details amino acids 844 to 865 (22 residues), see Phobius details amino acids 905 to 926 (22 residues), see Phobius details PF00005: ABC_tran" amino acids 33 to 181 (149 residues), 98.8 bits, see alignment E=1.3e-31 amino acids 298 to 442 (145 residues), 98.2 bits, see alignment E=2e-31 PF13304: AAA_21" amino acids 148 to 211 (64 residues), 30.2 bits, see alignment 1.4e-10 amino acids 420 to 472 (53 residues), 27.4 bits, see alignment 9.7e-10 PF12679: ABC2_membrane_2" amino acids 583 to 856 (274 residues), 37.1 bits, see alignment E=7e-13 PF12698: ABC2_membrane_3" amino acids 585 to 921 (337 residues), 121.9 bits, see alignment E=1e-38 PF01061: ABC2_membrane" amino acids 739 to 894 (156 residues), 45.8 bits, see alignment E=1.6e-15

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 73% identity to bmr:BMI_I1361)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (931 amino acids)

>TX73_021170 ribosome-associated ATPase/putative transporter RbbA (Rhodopseudomonas palustris CGA009)
MTVQTSAAGLVGSTQPVVRLAAVDLAYGGNHALQGITLDVPAGCMVGLIGPDGVGKSSLL
SLIAGARAIQTGTVAVLGGDMADTAHRRSVCPRIAYMPQGLGKNLYPTLSVFDNVDFFGR
LFGQGKEERERRIRELLQSTGLAAFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPT
TGVDPLSRRQFWELIDSIRAERAGMSVIVATAYMEEAARFDWLAAMDAGRVLATGGPANL
LTQTGAVTLDAAFIALLPEQQRRGYTEVVIPPRPVGVDDDIAIEAEHLTMRFDDFTAVDD
VSFRIGRGEIFGFLGSNGCGKTTTMKMLTGLLPASEGKAKLFGREVDPQDMEVRRRVGYM
SQAFSLYSELTVRQNLELHARLFRMTPAAIPGRIDEMLQGFDLAEVIDQLPDALPLGIRQ
RLSLAVAMIHSPDILILDEPTSGVDPVARDGFWRILSDLSRKDNVTIFVSTHFMNEAERC
DRISLMHAGRVLVSDTPRAIVAGRNASNLEEAFINYLEDAIGATPGEAPATAAPKPSADA
VEPGGDGAVARKASRRWFDLRRMFAYTRREALELRRDPIRATLALIGSVVLMFVLGYGIN
LDVEHLSFAALDRDDTAISRDYILQISGSRYFSEQAPIVDYADLDRRMRSGKLTLAIEIP
PGFGRDVARGRNVEIGAWIDGALPARAETTQGYVQAMHLSWLTQKARELYGAAAVAGSFE
IALRYRYNPGIKSLVAMAPAVIPLLLMMIPAMLAVLSVVREKELGSIINFYTTPTTRLEF
LIGKQLPYVALAMLNCLLLTAFAILVFQVPFTGSFLAFACGALLYVVIATGIGLLLSTFM
SSQIAAIFGTALITLIPAIQFSGLIDPVSSLQGFGAVVGRIYPTTYFVNITRGTFSKGLD
FVDLWGSFLPLLIAVPSLLGLGALLLKKQAR