Protein Info for TX73_021055 in Rhodopseudomonas palustris CGA009

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 876 transmembrane" amino acids 40 to 57 (18 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 199 to 219 (21 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 393 to 413 (21 residues), see Phobius details amino acids 421 to 459 (39 residues), see Phobius details amino acids 466 to 484 (19 residues), see Phobius details amino acids 495 to 513 (19 residues), see Phobius details amino acids 520 to 538 (19 residues), see Phobius details amino acids 542 to 562 (21 residues), see Phobius details amino acids 574 to 596 (23 residues), see Phobius details amino acids 605 to 624 (20 residues), see Phobius details amino acids 630 to 648 (19 residues), see Phobius details amino acids 654 to 677 (24 residues), see Phobius details amino acids 684 to 703 (20 residues), see Phobius details amino acids 714 to 737 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA4064)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (876 amino acids)

>TX73_021055 hypothetical protein (Rhodopseudomonas palustris CGA009)
MKSIDVSLTAVSSANTYSNIFSTSDGPKAIRLELTDPSNLFLVLGTLKYALLTDAFSLST
PKRISVKGVDKNYLTVSIDGFDVFSGSGEQLDFDNYDIDAFVVGSGFQRLRNFAGELLDL
KIKAEVAEDRKIIVTVRRSIALVIVAGLVLLLGKLLPDRPDGGIGKLQSGLHFDAVTLIL
MLSLASIGSMLRGVSGSSWTLLIMLGGAFPSLVAWRWLANRNRHDAPNFVRRLQHVAQSS
AANAAIVSLVIATTILVVFKLRKSADSVDAIVGSIGLIASVASIGVWSGCGCRDAGKIYS
VVAIAAAAALLACFLLHLPNGAVIIRQYVAWPFLTLATFGCFLLFLNRAVLGVALTNRRR
SFGVRLIANTLSACGFLVLAFRSDSLFIDGSQFHWAYFVGPVQAVRAGGWLLWDVPSQYG
LLPIAIISTLPFASAWNAFYVFQAALLFSAALIMYFVLLRVGLSRAIAFLVVAGTVFLAD
PRGFIGPMPFPSSSVVRFFWCYVVLAVACWTFLGPHPSVYRYLRLCLLPWLIGVLWSAES
FVYVTSITFAPVVVHLLSQFVFRRELSSSVIDVIYLLVMPITVLAAAIIGVQLFYLAKLG
HLADLSMFFQYALGYAGGFGAMPLSMQGPIWIFLLIMVCGVSCCAAMPGREMSVAGVVGV
LIAALACVWAILSYYIGRAVPDNVTALLPLLAFVSLIVARIGFKSGLLSPMSFGFLTTFL
ALVVASTVLSTSLLAGVPRMRFAFSGITSKLYPPETDLAAALKDAGVTANSAVSFYGYAA
SMPYAVVSSEVVSYEKPFFFGPFQLLEEPISAAKREIVIRRFVDRFASSGYIVQKRGEAE
DRLESVLNLIGRWYVISASVQRGQYRILRLDRDVPR