Protein Info for TX73_020945 in Rhodopseudomonas palustris CGA009

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 190 to 215 (26 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 266 to 289 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 10 to 280 (271 residues), 112.7 bits, see alignment E=9.3e-37

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 100% identity to rpt:Rpal_4573)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>TX73_020945 branched-chain amino acid ABC transporter permease (Rhodopseudomonas palustris CGA009)
MNSHLLIQLLVNGLVVGTLYGVVAMSFVLIYKATQVVNFAQGELLLIGAWVCWTLLAKYQ
LPFWVGMPITLVFMFIFGIAVQIIVLRPMIGEPIISVIMVTIALSTVFQAALKWIFGVNP
QPFPQIFTTRSISIGGLQIQTVYVMSLVVSVAMMIGMAWFFRVSKYGLAMRATAFNQQVA
QSLGISVKSVFAMAWAISATVSAVAGVVVAVVNGVSSGLSAYGIKVFPAAILGGLDSIGG
AVLGGIIIGLLENIAQYVDSEYLHWGNLYEIAPFYVLIIILMIKPYGLFGTKDIERI