Protein Info for TX73_020435 in Rhodopseudomonas palustris CGA009

Annotation: UPF0104 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 101 to 115 (15 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 270 to 286 (17 residues), see Phobius details amino acids 294 to 319 (26 residues), see Phobius details

Best Hits

KEGG orthology group: K07027, (no description) (inferred from 100% identity to rpa:RPA3944)

Predicted SEED Role

"FIG01007947: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>TX73_020435 UPF0104 family protein (Rhodopseudomonas palustris CGA009)
MHRLLSALGRGFKTYIGWKRVGIVASILIIGFAISSLIRTLKGVDHNVILTALTDKSPTQ
IGMAALCVVGAFCTLTFYDFFALRTIGKLHVPYRIAAMSAFTSYVIGHNLGATVFTGGAI
RFRIYSDYGLSAIDVAKICFISGLTFWLGNLFVLGIGMIWHPAAASAMDLLPDQINRLIG
VACLAGIAAYFIWLATGKKRRELGQNGWKVVLPSAKLTLVQVLIGVVDLGFCALAMYLLM
PSAPYIDYVSLAVVFILATLLGFASHAPGSLGVFDAAMLVALPMFAREDVIATLLIYRVL
YFLLPFGIAISIMGVREIWLSVIKPWQERRAACNGNEHAATAAPAAAPARAPVGQVVQRS
SKL