Protein Info for TX73_020085 in Rhodopseudomonas palustris CGA009

Annotation: fumarate hydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF05681: Fumerase
  • amino acids 63 to 335 (273 residues), 262.8 bits, E=3.5e-82
• TIGR00722: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type
  • amino acids 87 to 335 (249 residues), 108.1 bits, E=4.5e-35
• PF05683: Fumerase_C
  • amino acids 343 to 547 (205 residues), 287 bits, E=6.7e-90
• TIGR00723: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
  • amino acids 384 to 547 (164 residues), 178.1 bits, E=1.4e-56

Best Hits

Swiss-Prot: 63% identical to FUMA_ECOL6: Fumarate hydratase class I, aerobic (fumA) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K01676, fumarate hydratase, class I [EC: 4.2.1.2] (inferred from 100% identity to rpa:RPA3876)

MetaCyc: 63% identical to fumarase A (Escherichia coli K-12 substr. MG1655)
Oxaloacetate tautomerase. [EC: 5.3.2.2]; Fumarate hydratase. [EC: 5.3.2.2, 4.2.1.2]

Predicted SEED Role

"Fumarate hydratase class I (EC 4.2.1.2)" in subsystem TCA Cycle (EC 4.2.1.2)

MetaCyc Pathways

• superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (23/26 steps found)
• superpathway of glyoxylate bypass and TCA (12/12 steps found)
• superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (19/22 steps found)
• TCA cycle I (prokaryotic) (10/10 steps found)
• TCA cycle V (2-oxoglutarate synthase) (9/9 steps found)
• TCA cycle VII (acetate-producers) (9/9 steps found)
• partial TCA cycle (obligate autotrophs) (8/8 steps found)
• superpathway of glyoxylate cycle and fatty acid degradation (12/14 steps found)
• TCA cycle III (animals) (9/10 steps found)
• TCA cycle VIII (Chlamydia) (6/6 steps found)
• TCA cycle II (plants and fungi) (8/9 steps found)
• TCA cycle VI (Helicobacter) (8/9 steps found)
• anaerobic energy metabolism (invertebrates, mitochondrial) (8/10 steps found)
• superpathway of anaerobic energy metabolism (invertebrates) (13/17 steps found)
• TCA cycle IV (2-oxoglutarate decarboxylase) (7/9 steps found)
• mixed acid fermentation (11/16 steps found)
• reductive TCA cycle I (7/11 steps found)
• incomplete reductive TCA cycle (4/7 steps found)
• pyruvate fermentation to propanoate I (4/7 steps found)
• reductive TCA cycle II (7/12 steps found)
• methylaspartate cycle (11/19 steps found)
• (S)-lactate fermentation to propanoate, acetate and hydrogen (6/13 steps found)
• L-glutamate degradation VIII (to propanoate) (4/11 steps found)
• Methanobacterium thermoautotrophicum biosynthetic metabolism (19/56 steps found)

KEGG Metabolic Maps

• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from terpenoid and polyketide
• Biosynthesis of phenylpropanoids
• Biosynthesis of plant hormones
• Biosynthesis of terpenoids and steroids
• Citrate cycle (TCA cycle)
• Reductive carboxylate cycle (CO2 fixation)

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.2

Use Curated BLAST to search for 4.2.1.2 or 5.3.2.2

Protein Sequence (551 amino acids)

>TX73_020085 fumarate hydratase (Rhodopseudomonas palustris CGA009)
MNAPTPIPSAATPVPPYKHTPLFPLGKDETVYRKITSDGVRVEKVLGRDMLVVEREALRA
LSEAAFGEINHYLRPGHLKQLRAILDDPEASPNDKFVALDFLKNANIAAGGVLPMCQDTG
TAIIMGKKGSNVITDGDDEAALSEGARDAYLRRNLRYSQVAPLSMFEEKNTANNMPAQCE
IYAEGDDAYKFMFMAKGGGSANKSFLFQATPSLLTRDRLLAFLKEKIMTLGTAACPPYHL
AIVIGGTSVETTMKTVKLASARYLDALPTHGSELGNAFRDVEMEQEIHKMTQSLGVGAQF
GGKYFCHDVRVIRLPRHGASLPIGLGVSCSADRQMVGKITKDGVYLEELEHNPAQYLPEV
EQALGGEVVKIDLNQPMKDILATLSKHPIKTRLSLTGTMIVARDAAHAKLRDRLEKGEPL
PDYFKNHPVYYAGPAKTPDGYASGAFGPTTAGRMDSFVDQFQAAGGSMVMVAKGNRAPAV
REACKKYGGFYLGSIGGAAANLAEHCIKKVEVLEYPELGMEAIWKIDVVDFPAFIIVDDK
GNDFFKELNLG