Protein Info for TX73_019740 in Rhodopseudomonas palustris CGA009

Annotation: cytochrome c biogenesis protein CcdA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 transmembrane" amino acids 6 to 33 (28 residues), see Phobius details amino acids 54 to 79 (26 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 130 to 157 (28 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 210 to 234 (25 residues), see Phobius details PF02683: DsbD" amino acids 11 to 222 (212 residues), 202.9 bits, see alignment E=2.9e-64

Best Hits

KEGG orthology group: K06196, cytochrome c-type biogenesis protein (inferred from 100% identity to rpa:RPA3812)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcdA (DsbD analog)" in subsystem Biogenesis of c-type cytochromes or Experimental tye or Periplasmic disulfide interchange or Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>TX73_019740 cytochrome c biogenesis protein CcdA (Rhodopseudomonas palustris CGA009)
MIHDVSIPAALIAGLVSFLSPCVLPLVPPYLIYLTGATIEHVAADEAERTSKRAVMISAA
MFVLGFSTVFVALGASASLVGTLIRAYSAQLAIVAGVVIILMGLHFLGLTRINILMREGR
LPIPKPVGLWGAYVMGLAFAFGWTPCIGPILAAILSVAAAEATVAKGAGLLAVYSLGLGV
PFLLAALMIEQFSGLFARMKKHLATVERAMGVLMVLTGIGFLTGAISDVSIWLLNTFPAL
GNIG