Protein Info for TX73_019440 in Rhodopseudomonas palustris CGA009

Annotation: transglutaminase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 PF08379: Bact_transglu_N" amino acids 6 to 82 (77 residues), 87.6 bits, see alignment 1.1e-28 PF01841: Transglut_core" amino acids 132 to 245 (114 residues), 61 bits, see alignment E=2e-20 PF09899: DUF2126" amino acids 278 to 1108 (831 residues), 1339.9 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>TX73_019440 transglutaminase family protein (Rhodopseudomonas palustris CGA009)
MSIYVALHHVTHYKYDRLVDIGPQTIRLRPAPHTRTPILSYSLKVTPANHFINWQQDPQG
NWLARFVFPEKADELKIEVDFTAAMTVINPFDFFVESYAESFPFSYTGDLQHELAPYLAT
TEPGPLFKAYLDSIPREAESTVNFLVDLNAKLRERVNYIIRMEPGVQTPEETLAKGAGSC
RDSAWLLIQTLRHLGLAARFVSGYLIQLRPDIESLDGPKGAAHDFTDLHAWAEVYLPGAG
WVGFDVTSGLLAGEGHIPVAATPHYRTAAPISGVVGFANVDFKFDMRVERIREAPRITMP
FSDESWARLDALGEKVDADLVAHDVRLTMGGEPTFVSIDDLESPEWNVAAVGGAKRMLAD
DLIRRLRTRFAPGGLLHFGQGKWYPGESLPRWAFGLYWRKDGVPIWNNADLIAPVVGQRP
AKVEEAEQFAIGTAKRLGIDTDYVLPAYEDPNHWLQKEAALPPNVDPQDNKLSDPEERAR
MARVFDTGLNTPRGFVLPIQAWNAEATPAQKKRWRSERWKLRRGNLFLLPGDSPLGFRLP
ISSLPHIPEDDYPFIVPRDPLEPRGTLPLFAPPPANDADPEREQMPVFEQSAGEATTSQP
VEEQKLRKGGVRTAMSIELREGVLCAFMPPTETIEDYLELIAAVEATAEEMQIRVHIEGY
PPPYDPRIDVIKVTPDPGVIEVNIQPATSWREAVRTTFGLYEDAAQVRLGANRFLIDGRH
TGTGGGNHVVVGGASPADSPFLRRPDLLKSLVLFWQRHPSLSYLFSGMFIGPTSQAPRID
EARHDSLYELEIALTQVPPPGVKGPLWLADRLFRNILVDITGNTHRAEICIDKMYSPDSP
TGRLGLVEFRALEMPPDPRMSLAQQLLIRALIAMLWREPLSGKFVRWGTALHDRFMLPHY
LWEDFRDVLGELGHAGYAFEPEWFTAQLEFRFPVFGSVYHGGVTLEVRQALEPWHVLGEE
GTAGGTVRFVDSSVERLQVKAEGFVEGRHVITCNGRRLPMTATARSGEAVAAVRFKAWQP
ASGLHPTIPVHAPLVFDIVDTWNGRSLGGCVYHVAHPGGRAYETKPVNSYEAEARRLARF
QDHGHTPGRIDPPHEERTLEFPLTLDLRTPLLH