Protein Info for TX73_019335 in Rhodopseudomonas palustris CGA009

Annotation: MMPL family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 868 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 403 to 423 (21 residues), see Phobius details amino acids 452 to 473 (22 residues), see Phobius details amino acids 710 to 732 (23 residues), see Phobius details amino acids 740 to 762 (23 residues), see Phobius details amino acids 768 to 789 (22 residues), see Phobius details amino acids 801 to 822 (22 residues), see Phobius details amino acids 834 to 853 (20 residues), see Phobius details TIGR03480: hopanoid biosynthesis associated RND transporter like protein HpnN" amino acids 6 to 859 (854 residues), 1061.1 bits, see alignment E=0 PF03176: MMPL" amino acids 230 to 429 (200 residues), 65.4 bits, see alignment E=2.2e-22 amino acids 640 to 854 (215 residues), 21.8 bits, see alignment E=4.1e-09

Best Hits

KEGG orthology group: K07003, (no description) (inferred from 100% identity to rpa:RPA3733)

Predicted SEED Role

"Hopanoid-associated RND transporter, HpnN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (868 amino acids)

>TX73_019335 MMPL family transporter (Rhodopseudomonas palustris CGA009)
MLKSAIVSIVRASTRFAAFTVLIGVFLAVAAGFYTYQHFGINTDINHLISSDLDWRKRDI
AFEKAFDQERLILAVVEAPTPEFANAAAAKLTAELSKNNINFDSVKRLGGGPFFDRSGLL
FLPKDEVAKATGQFQQAVPLIEIMAGDPSIRGLTAALETGLVGVKRGELTLDATAKPFNT
VAATVEDVLGKQQAFFSWRGLVNPEPLTDGDKRAFIEVKPILDFKALEPGKAATDAIRQA
AVDLKIEQDFGARVRLTGPVPIANEEFATVKDGAVVNGIGTVVVVLLILWMALHSSKIIF
AVAANLVIGLSITTAVGLMLVDSLNLLSIAFAVLFVGLGVDFGIQFSVRYRSERHKTGDL
EKALVQAAEYSAVPLSLAAMSTTAGFLSFLPTSYKGISELGEIAGAGMAIAFFTSITVLP
ALLKLLNPAGEKEPLGYAFLAPVDHFLEKHRIAIIVGTIGVALAGLPLLYFMHFDFNPIN
LRSPKVESIATFLDLRKDPNTGANAVNVMAPNEQTAREIEAKLAKLPQVSRTISLDTFVP
PDQPEKLKLIQAGAKVLEPALNPEQVDPPPSDQDNIASLKSSAEALSRAAGEATGPGADA
SRRLATALTKLAGADQAMREKAQDVFVRPLLLDFELLRNMLKAQPVTLDNLPADIVSSWK
TKDGQIRVEVLPSGDPNDNDTLRKFAAAVLQAEPLATGGPVSILKSGDTIVASFIQAGLW
ALLSISVLLWITLRRISDVALTLVPLLVAGAVTLEICVLIDLPLNFANIVALPLLLGVGV
AFKIYYVTAWRSGRTNLLQSALTRAIFFSALTTATAFGSLWLSSHPGTASMGKLLALSLL
TTLGAVLLFQPALMGKPRHIDESGDTDL