Protein Info for TX73_019000 in Rhodopseudomonas palustris CGA009

Annotation: urea ABC transporter ATP-binding protein UrtD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 12 to 254 (243 residues), 376.9 bits, see alignment E=2.4e-117 PF00005: ABC_tran" amino acids 29 to 183 (155 residues), 110.7 bits, see alignment E=1.4e-35 PF12399: BCA_ABC_TP_C" amino acids 232 to 253 (22 residues), 27.6 bits, see alignment (E = 2.7e-10)

Best Hits

Swiss-Prot: 36% identical to LIVG_ARCFU: Probable branched-chain amino acid transport ATP-binding protein LivG (livG) from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to rpt:Rpal_4188)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>TX73_019000 urea ABC transporter ATP-binding protein UrtD (Rhodopseudomonas palustris CGA009)
MSMLETRSTSAMLYLDGVHVSFDGFHAINNLSLTLEPGEMRAIIGPNGAGKTTMMDIITG
KTKPDKGEVVFDGTVDLTKLDETEIAKLGIGRKFQKPTVFESQTIEDNLLLALNVDHSVR
GTLFWRRSRDESERIERVLDIIRLRDARDRLAGSLSHGQKQWLEIGMLLAQDPKVLLVDE
PVAGMTDVETQQTAELLREINSHDKTVMVVEHDMTFVRELGVKVTCLHEGAVLAEGTIDD
VSANERVVEVYLGR