Protein Info for TX73_018440 in Rhodopseudomonas palustris CGA009

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 signal peptide" amino acids 14 to 16 (3 residues), see Phobius details transmembrane" amino acids 17 to 34 (18 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 105 to 128 (24 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 323 to 345 (23 residues), see Phobius details PF03773: ArsP_1" amino acids 55 to 346 (292 residues), 240.7 bits, see alignment E=1e-75

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 99% identity to rpt:Rpal_4076)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>TX73_018440 permease (Rhodopseudomonas palustris CGA009)
MTASDFTGKPRPVTTKLLVTVLLVVLWVVVYAALSPASEWIVRQLPLDPAGGTARALAFF
IYDTPKVLMLLTLIVFAMGVVRSFFSPERTRALLAGRREGVGNVAAAGLGVLTPFCSCSA
VPLFIGFVSAGVPLGVTFSFLISAPLVNEVALGLLLALLGWKVALLYLLLGLAVAIVAGM
VIGRLHLEGWLEDWVRALRTEAAPLAAERLSASDRIDAGVEAVRDIVGRVWPWIIAGIAI
GAGIHGWVPEGLLAGIMGREAWWSVPAAVAIGIPMYSNAAGIVPVVEALLGKGAALGTTL
AFMMSVTALSAPELIILRKVLTVRLIAVFVAVVGLGILAVGYLFNFLFG