Protein Info for TX73_018145 in Rhodopseudomonas palustris CGA009

Annotation: AsmA-like C-terminal region-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05170: AsmA" amino acids 9 to 133 (125 residues), 48.3 bits, see alignment E=7.2e-17 PF13502: AsmA_2" amino acids 868 to 1051 (184 residues), 38.4 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3502)

Predicted SEED Role

"TolA protein" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1271 amino acids)

>TX73_018145 AsmA-like C-terminal region-containing protein (Rhodopseudomonas palustris CGA009)
MQTTLLGLAIALILALLAALVGPYLIDWNQFRTPFEAEATRLLGAQVRVAGPLDARLLPT
PSLRLQRVTVGGANDAGRVAAAKLDVEFSLGSLMRGELRADELSINGLSLDLGLDPQGRL
DWPAAGLSNLAALTVDRLNLTGRIALHDAASRSNLELSDIAFSGELRAQAAALRGDGNLL
LGGQRYPFRLSTSRAADSDAIRLRAGINQGAGGIAADLDGLVRFEQSRPRFDGTASLAAL
AAATGEMPRTPWRLAAKVEADPALAKLDQVEVSWGADDRALKLTGSGEARFGAAPRLDAK
LSARQLDADRLLAKPGDVAQPLPWLARLRDLAASLPLPSLLARVSLDADQIMIGNRPVTD
LVAELRGDSQTWQLERLELRAPGGTRLALRGGAGVADAAITGTFDLSATDPDLLAAWLQG
RAPTAGSLSKALRIAGGVRAGSDALVLDPLTVESGGDTLRGRFAYRARRDDQGAQIDAAL
KGDSADLDAALQWARTLAGSDGGWPEQASLTLDLGKLSVGDQVWQPAAVQLSYDPHRIAL
DRLKLGTAGGVLLEGDGALDRDNATGRLALSTRAPSLGPIAAAIDPFAPAIAARLKALPT
DPGEVRAKLALAVEKAGAVRDHVEASGTLDLAGPQLSGRLTAKASPPAADLHKLDVEALT
RRALQLESELSAPRGEALLSLLGLDRVIASGDGAAVLHASGSGTWRGKLQGKAKLTAARL
DAEASGEVEPFAAEPKASLSLNARKLDLAPLFDLPPSGANEAPLSFSTQLAVAGSKWTFK
DIDAGIAGSRLRGRLALTRGETAELDGEAGIDTLPLGPALQLALGAAGRPAAEPLGLGWL
RGWRGKIAFQAVRAELPGGSELQPLRGVVRSDGRSLTLDSSGKLGGGDAKAVLTAKLTDA
GMALDAQLTLKDADAAALRDGALALPPGRLSLQGTLASSGRSASAIAGALSGGGTVTLSQ
AAISGLDPSAFAVAIRAADQGQPIDADHLAKLIEPALKAGPLKVDSAQFPISVGDGRLKL
APTTLQAKDARAVVSGGYDVAAGQADVRVTLISTEPAQELPPEIRVFAAGPPDRMEWSVD
LAGLSSWLSIRRIDRETRKLQMLEQGGKPPVGPDPATATQTPSNADKSSAQTSSLPPPAA
PESAPTPPRVPAGNRQTVPKSAPEAAPQPNAPANGQDAAISPTQPFTPPLPDADPRRATP
PKPRVQPQRPSQPQPQTPLQPQASTAASSTLREKLAPLPPPLEIKPAPGDTRPSRPRAPL
VLSPPNARATD