Protein Info for TX73_017285 in Rhodopseudomonas palustris CGA009

Annotation: GMC family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 PF05199: GMC_oxred_C" amino acids 444 to 572 (129 residues), 94.6 bits, see alignment E=1.7e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3344)

Predicted SEED Role

"Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site" in subsystem Respiratory dehydrogenases 1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (582 amino acids)

>TX73_017285 GMC family oxidoreductase (Rhodopseudomonas palustris CGA009)
MLVENLAHFSADTRFEADLVIIGGGPAGLTVARELRGAPLRVLIVESGLLEEAPQANELS
TLESIGEPNAPHQIQKRIAFHGANCRSWTQDLQPYGVRCRALGGSTHAWAGKSAAFDDID
FQERAWVPHSGWPMDRSSLDPFLDRAADILNLGPNRYDDTLWTLLGISPPEPQLGTQGLR
SFFWQFSRSRVDPLDIMRFGADFLRLEADNIRVLLNATATRLDLTQEGDGFRGLEIATND
GQRHTVHAKAAVIAGGGIENARLLLASTTIHANGVGNQYDLVGRFLMDHAGARIARFGGS
NANQIMRRFGFYGLRNSGRTSMYMHGLAITPEMQEREHLLNSAIYFMPEHAADDPWDAVK
RLLTGKSKRQVKDAMRAIAGAGLLGKGAAMKLLSSDRLPVAVKDFIVQTAIRYMPNVAAD
DFLSRGVPHKVTDVWIDAISEQQPDPDSRITLSEKTDRLGLPLARVNWKINADERRTIMR
LGHIVESAFAQARLPKPILEPWVAEGAFNDAVIIDMAHSMGTTRMSASARSGVVDEQCQV
HGVRDLYIAGSSIFPTSGHANPTLMIVAFAVRLADRIRQTLL