Protein Info for TX73_016865 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 216 to 232 (17 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 338 to 362 (25 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 351 (334 residues), 160.7 bits, see alignment E=4.9e-51 amino acids 270 to 395 (126 residues), 51.2 bits, see alignment E=9.4e-18 PF06779: MFS_4" amino acids 26 to 384 (359 residues), 32.6 bits, see alignment E=5.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3262)

Predicted SEED Role

"Oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>TX73_016865 MFS transporter (Rhodopseudomonas palustris CGA009)
MNHPYRWVIVAAGGVLGCVAAGAMFSLPVLIRPMSQDTGWSVTGISTAMTIGFLAMAAAS
MVWGNLSDRFGPRPVVLTGSVVLAASLALGSRATSLIEFQLLFGALVGAATAAVFAPMMA
CVTGWFDTGRGLAVSLVSAGMGMAPLTMAPLAAWLVTIHDWRGAMLIISAITAALMIPAA
LLVRRPPALEPGGAEGAWADAQDDMTLRQAVRSPQFVTLLLANFFCCATHSGPIFHTVSY
AVTCGIPMIAATSIYSVEGLSGMFGRLGFGLAGDRFGAQRVLVIGLLAQAFGVLAYAFVG
GLGGFYAVAVAVGFIYAGTMPLYAVIIRENFPLRMMGTIVGGTAMAGSLGMSTGPVLGGL
IYDAYDSYAPMYVASCGMGLAAMLILATFRPFPQRRGELAVA