Protein Info for TX73_016655 in Rhodopseudomonas palustris CGA009

Annotation: replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 PF05496: RuvB_N" amino acids 30 to 158 (129 residues), 53.9 bits, see alignment E=6.7e-18 PF07728: AAA_5" amino acids 63 to 152 (90 residues), 34.1 bits, see alignment E=8.8e-12 PF00004: AAA" amino acids 64 to 174 (111 residues), 60.2 bits, see alignment E=1e-19 PF16193: AAA_assoc_2" amino acids 193 to 268 (76 residues), 78.2 bits, see alignment E=1.6e-25 PF12002: MgsA_C" amino acids 269 to 434 (166 residues), 224 bits, see alignment E=3.8e-70

Best Hits

Swiss-Prot: 48% identical to RARA_HAEIN: Replication-associated recombination protein A (rarA) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07478, putative ATPase (inferred from 100% identity to rpa:RPA3220)

Predicted SEED Role

"FIG065221: Holliday junction DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>TX73_016655 replication-associated recombination protein A (Rhodopseudomonas palustris CGA009)
MSPKRPQASDNLFAAAGLERDAPRPLPDRLRPRSLADVVGQDHILGPDGALTRMLQTRTL
GSLVFWGPPGTGKTTVARLLADATELQFEQISAVFSGVADLKKVFDAARARREMGKGTLL
FVDEVHRFNKAQQDSFLPVMEDGTVVMVGATTENPSFELNAALLSRARVLIFKPLDAAAI
EQLFSKAEAAEGRKLPLDDEARAVLARMADGDGRASLTLAEEVWRSAREGEVFNAAQLQE
ILQRRAPIYDKSADGHYNLISALHKSVRGSDPDAALYYLCRMLDAGEDPLFLARRVVRMA
VEDVGMADPQALVIANAAKDAYDFLGSPEGELAIAQAVIYVATAPKSNAAYSAYKSAMRL
AKQAGSLLPPKHILNAPTGLMKNEGYGSGYQYDHDTPEGFSGQDYFPETLGRQTFYDPPD
RGFERDIRKRLDYWAKLRAAKGS