Protein Info for TX73_016450 in Rhodopseudomonas palustris CGA009

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details amino acids 66 to 92 (27 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 270 to 287 (18 residues), see Phobius details PF00892: EamA" amino acids 17 to 142 (126 residues), 50.2 bits, see alignment E=1.5e-17 amino acids 153 to 287 (135 residues), 43.5 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3181)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>TX73_016450 DMT family transporter (Rhodopseudomonas palustris CGA009)
MNRNAEHLAGRAAPAVFVVLWSTGFIGTKYALAGAEPLTYLSIRMIAVVSLIAVIAAIAR
PRWPNLAGVGHSIVAGLLVHGVYLAGTSIAIAHSVPAGLSALIPGLQPILTSTLANRWLG
ERVTPLQWLGLGLGLGGTLLILHSRSLTGDVGWGWLASACSLIGITIGTLYQKRFCSGID
WRAGNIIQFLAALALFAVGAVLFETRVVNWTTEFVLAVGWLVVVLSIGSIGLLYWLIRHS
AATSVASLFYLVPGTTALMAYVLFGEKLDVVSIVGMVICAAAVFLVNRAKV