Protein Info for TX73_016260 in Rhodopseudomonas palustris CGA009

Annotation: lytic transglycosylase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01464: SLT" amino acids 88 to 191 (104 residues), 71.3 bits, see alignment E=5.1e-24 PF05036: SPOR" amino acids 259 to 339 (81 residues), 31.6 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA3145)

Predicted SEED Role

"bll5139; probable transglycosylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>TX73_016260 lytic transglycosylase domain-containing protein (Rhodopseudomonas palustris CGA009)
MIRAPSLASAAAALVLLACAAAHAEETPQPKTDAAAPPAAAEPRKPAPAADQAKPAAEPN
QATPGDKPSDATDKGGDPGTRESICLMIESAAKAHDLPLEFFARVIWQESRFQPDAVGPV
TRSGKRAQGIAQFMPGTASERRLLDPFDPVQALPKSAEFLKELRDQFGNLGLAAAAYNAG
PRRVQEWLAGTGGMPLQTRDYVFAITGSSVDDWAKAGRAAKLPEAKGDTDCRTLMALLKR
APNPFVAELEQRVKLGADRPWGVQLAAGFNRNRALASYARAMSRLSTVIGERDPTLLSGV
FRSRGTRPFYQVRIGAETRGEADDLCKQIRRAGQACLVLRNRG