Protein Info for TX73_016175 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 127 to 152 (26 residues), see Phobius details amino acids 161 to 185 (25 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details PF07690: MFS_1" amino acids 43 to 286 (244 residues), 91.1 bits, see alignment E=6.8e-30 amino acids 245 to 406 (162 residues), 40.9 bits, see alignment E=1.3e-14 PF00083: Sugar_tr" amino acids 71 to 208 (138 residues), 42.2 bits, see alignment E=5.3e-15

Best Hits

Swiss-Prot: 41% identical to YGAY_ECOLI: Putative uncharacterized transporter YgaY (ygaY) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_3539)

Predicted SEED Role

"putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>TX73_016175 MFS transporter (Rhodopseudomonas palustris CGA009)
MSVSEPALRVAEESRPEPPPKPGPGGASVPGPAMGAGLTLAMAAAAGISVANIYYNQPML
GVIERDLGNPALTGMIPTATQLGYAVGLFLLVPLGDLTDRRRLIAGQFVLLAVAAALVAL
APSAWLIIAASLALGACATVAQQVVPFAAALAAPERRGKTIGLVMAGLLCGILLSRTVAG
FVAGHLGWREMFWLAVPAALAAAALMAWLLPRHHGHLDISYGAALKSLASLWREQRDLRR
GTAVQAALFASFSVFWTVLALHLQEPKFGLGAEAAGLFGLVGVVGVLAAPISGRIADRSG
PGPVIAIGAALVLASWVLFGLWGSVVGLLIGVVVLDFGLQSALISNQHIVYALVPEARNR
LNTVFMTGMFVGGSVGSAGAAFAWAHGGWTVVSLYGGALAAIALLLELTARWSRR