Protein Info for TX73_015885 in Rhodopseudomonas palustris CGA009

Annotation: endolytic transglycosylase MltG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 418 transmembrane" amino acids 35 to 59 (25 residues), see Phobius details PF02618: YceG" amino acids 76 to 351 (276 residues), 279.2 bits, see alignment E=2e-87 TIGR00247: conserved hypothetical protein, YceG family" amino acids 178 to 351 (174 residues), 191.4 bits, see alignment E=1.2e-60

Best Hits

KEGG orthology group: K07082, UPF0755 protein (inferred from 100% identity to rpt:Rpal_3481)

Predicted SEED Role

"FIG004453: protein YceG like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (418 amino acids)

>TX73_015885 endolytic transglycosylase MltG (Rhodopseudomonas palustris CGA009)
MSERPPISPRSPRAALEPEQLPPPPKRSDHARNPLVIIGNAIITFIVVVMIGAGGLYVYG
KNKLEAPGPLAQDKTVNIPQRAGLDDIAQILKREGVIEDGWLVFAGGVMALRARTELKPG
EYLFQKNASLRDVIGTIVEGKVVQHAVTIPEGLTSEQIVERLSDNPIFTGSIREIPREGT
LLPETYKFPRGTPREQVIHRLQQAQKRVLSEIWERRSPDLPIKTPEQLVTLASLVEKETG
KPDERTRVAAVFVNRLQKKMRLQSDPTIIYGLVGGKGTLGRPIKRSEITQPSPYNTYVID
GLPPGPIANPGRASLEAAANPARTRDLYFVADGSGGHAFSDNYEVHQKNVGKLRAQEKQL
QNDTVEPPEETPPTAAAPAAEPAGDPAAAAPAGAPKAAGKNGAQKRRARNATPNGATE