Protein Info for TX73_015490 in Rhodopseudomonas palustris CGA009

Annotation: NADPH:quinone oxidoreductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF08240: ADH_N" amino acids 27 to 86 (60 residues), 39.5 bits, see alignment E=6.7e-14 PF00107: ADH_zinc_N" amino acids 151 to 277 (127 residues), 89.8 bits, see alignment E=2.2e-29 PF13602: ADH_zinc_N_2" amino acids 183 to 322 (140 residues), 72.3 bits, see alignment E=1.2e-23

Best Hits

KEGG orthology group: K00344, NADPH2:quinone reductase [EC: 1.6.5.5] (inferred from 100% identity to rpa:RPA2989)

Predicted SEED Role

"Quinone oxidoreductase (EC 1.6.5.5)" in subsystem ZZ gjo need homes (EC 1.6.5.5)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.5

Use Curated BLAST to search for 1.6.5.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>TX73_015490 NADPH:quinone oxidoreductase family protein (Rhodopseudomonas palustris CGA009)
MKAVVVDDYAAIDQVALKQIARPTVTPGSVRVRVQAVGIGFVDGLKVQGRYQTKDPLPFI
PGTEFAGVIDAVGDGVANYAAGQTVMGIARSGALAEYIVVPAEAVAPLPDGVSPEEGASF
RANYLTAYYALAERAKLQRDEILLVLGAAGGVGTAAIQIGKLLGARVIAGASTAQKRDFA
LKLGADAVIDYTQPDWRDTFKTLTGGHGADVIFDPIGGPVAVEAFRSIAWNGRHIVVGFA
AGSIPALPFNLPLLKGGSLLGVDLAQLPRREPDVLARCTAELSRLLASGALKPAIVSAFA
LEDFRAAFTALAGRDALGKVVVRIAP