Protein Info for TX73_015150 in Rhodopseudomonas palustris CGA009

Annotation: DNA polymerase III subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1151 TIGR00594: DNA polymerase III, alpha subunit" amino acids 6 to 1029 (1024 residues), 1194 bits, see alignment E=0 PF02811: PHP" amino acids 8 to 180 (173 residues), 129.4 bits, see alignment E=3.4e-41 PF07733: DNA_pol3_alpha" amino acids 306 to 572 (267 residues), 350.1 bits, see alignment E=1.8e-108 PF17657: DNA_pol3_finger" amino acids 575 to 737 (163 residues), 218.1 bits, see alignment E=9.4e-69 PF14579: HHH_6" amino acids 810 to 897 (88 residues), 90 bits, see alignment 1.9e-29

Best Hits

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 68% identity to azc:AZC_1691)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1151 amino acids)

>TX73_015150 DNA polymerase III subunit alpha (Rhodopseudomonas palustris CGA009)
MSNAGFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGY
GIQPIVGLELGIDFGDQDPNSRHGALATPARIVLLAAREQGYRSLMRLNSRAFLETPVNQ
VPHVKLEWLEGETDGVVALTGGPDGPISLAMLTDPALAAQRCERLQQAFGDRLYVELQRH
GTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRIQF
TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAA
AAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFI
KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ
DRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV
PLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDLHTLPI
DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRA
EMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAGLK
GVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRARVFG
GADAIVAACQRNHEAATSGQNDMFGGLSDAPSIILPQLEPWLPAERLRREYDAIGFFLSG
HPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIIGLSDP
TGHFEAVLFSEGLAQYREVLEPGAAVLMQLGAELQGEDVRARVLHAEPLDAAAAKTQKGL
RIFLRDTKFLDSVVKRLQPPETKVAGGNIALVLRLDPQTEVEFDIPGRYHVSPQIAGAIK
AVTGVEHVETL