Protein Info for TX73_015135 in Rhodopseudomonas palustris CGA009

Annotation: translation elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 TIGR00116: translation elongation factor Ts" amino acids 1 to 305 (305 residues), 296 bits, see alignment E=1.4e-92 PF00889: EF_TS" amino acids 71 to 288 (218 residues), 218.6 bits, see alignment E=6.6e-69

Best Hits

Swiss-Prot: 100% identical to EFTS_RHOPA: Elongation factor Ts (tsf) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K02357, elongation factor Ts (inferred from 100% identity to rpa:RPA2921)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>TX73_015135 translation elongation factor Ts (Rhodopseudomonas palustris CGA009)
MATITAAMVKELRETTGVGMMDCKQALAETDGNIDAAIDWLRKKGLSKAAKKAGRVAAEG
LIGALTDGTKGVVIEVNSETDFVARNEQFQGLVKMIAQVALKVGADLDAINAAPVGSTTV
AGAIADAIATIGENMTLRRAAALSVSQGVVASYIHNAVIDGAGKMGVIVALESAGKADEL
AVLGRQLAMHVAAANPQALDPTSLDPAVVQREREVMADKYRQQGKPENMIEKIVENGLKT
YYKEVCLLEQAYIHDEKGKSVAQAVKEAEGKVGAPIKIVGFVRYALGEGIEKQTSDFAAE
VAAASGQK