Protein Info for TX73_014775 in Rhodopseudomonas palustris CGA009

Annotation: SPOR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 251 to 271 (21 residues), see Phobius details PF05036: SPOR" amino acids 458 to 538 (81 residues), 55 bits, see alignment E=4.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2853)

Predicted SEED Role

"Sporulation domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>TX73_014775 SPOR domain-containing protein (Rhodopseudomonas palustris CGA009)
MTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRPEPAPPVAP
QTRSTDFRASRPVPPQAEDESSPPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDFSRPPS
FINAAPPRRAEAPSFERAPAIQPPIDPNPLQMRPLEQPAMDLRSLDPRFDPAPPEQRQLD
LPPPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGYDDQAD
QRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKVPGPSN
DNAGKPIQDRLASSNGVEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPVASVAP
GGKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADAAAQPAGAARAAAPAARTPGRGVADA
NASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEADAKASYRS
LQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQCVVQRN