Protein Info for TX73_014390 in Rhodopseudomonas palustris CGA009

Annotation: TatD family hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 TIGR00010: hydrolase, TatD family" amino acids 2 to 254 (253 residues), 267.7 bits, see alignment E=5e-84 PF01026: TatD_DNase" amino acids 3 to 254 (252 residues), 290.7 bits, see alignment E=4.7e-91

Best Hits

Swiss-Prot: 38% identical to Y343_BUCAP: Uncharacterized metal-dependent hydrolase BUsg_343 (BUsg_343) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: K03424, TatD DNase family protein [EC: 3.1.21.-] (inferred from 99% identity to rpt:Rpal_3117)

Predicted SEED Role

"Putative deoxyribonuclease YcfH" in subsystem YcfH

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>TX73_014390 TatD family hydrolase (Rhodopseudomonas palustris CGA009)
MLVDSHCHLDFPDFADDLAGIVARAEASGVGRMVTISTRVRKLPDLVAIAERFPTVYCSV
GTHPHHADEEDGIATDELVKLAQHPKVVAFGEAGLDYFYEMGSREAQERGFRAHIAAARE
TGLPLVIHTREADEDCGKILEDEMGKGAFRAVLHCYTGGRDLAMQAIDLGLMISFTGILT
FKKSQALRDLAAELPADRVLVETDSPYLAPGKYRGKRNEPSYVVETAKVLAEVRGVSLDE
IARQTTENFFRLFGKVPAPAAA