Protein Info for TX73_014040 in Rhodopseudomonas palustris CGA009

Annotation: efflux RND transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF16576: HlyD_D23" amino acids 2 to 193 (192 residues), 47.7 bits, see alignment E=2.4e-16 PF13533: Biotin_lipoyl_2" amino acids 2 to 48 (47 residues), 58.8 bits, see alignment 7.4e-20 TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 2 to 193 (192 residues), 107.3 bits, see alignment E=3.8e-35 PF00529: CusB_dom_1" amino acids 94 to 241 (148 residues), 32.9 bits, see alignment E=1e-11 PF13437: HlyD_3" amino acids 111 to 198 (88 residues), 38.4 bits, see alignment E=3.5e-13

Best Hits

Swiss-Prot: 41% identical to YDHJ_ECOLI: Uncharacterized protein YdhJ (ydhJ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2709)

Predicted SEED Role

"possible FusE-MFP/HlyD family membrane fusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>TX73_014040 efflux RND transporter periplasmic adaptor subunit (Rhodopseudomonas palustris CGA009)
MVQIAPEVSGTIRTVPIADNQYVKRGDVLYEIDPERLRLAVALAEADVEAKYQDMLVRQA
TAQRKQQLKLNDVVSQEALQQSSGAAAMATAAYQAALATRDLAKLNLARSVIRSPVDGYV
TNLKLRPGDYATAGVTNVAILDGASFWITGYFEETKLQQIRVGAPARVKLMGFDQPAAGH
VESIGRGIENSNETPGRFGLPNVAATFSWVRLAQRIPVRIHLDRVPSGVELAAGMTATVE
IIPPEVEANAGRRS