Protein Info for TX73_013855 in Rhodopseudomonas palustris CGA009

Annotation: TerC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 125 to 151 (27 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details PF03741: TerC" amino acids 15 to 204 (190 residues), 150.9 bits, see alignment E=1.7e-48

Best Hits

Swiss-Prot: 47% identical to Y056_HAEIN: UPF0053 protein HI_0056 (HI_0056) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 99% identity to rpt:Rpal_2948)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>TX73_013855 TerC family protein (Rhodopseudomonas palustris CGA009)
MIELLSSPEAWAALLTLTALEIVLGIDNVIFLSVLVSRIPEPRATRARQIGLGLALLFRL
ALLSVLVWLIGLTTPVFSIADRAFSWRDIILILGGLFLIAKATHEIHAEVEAKDGEAQPS
TADRAFFWVIVQIVIVDLVFSIDSIITAIGMAQDIEIMVAAVLIAMAVMYVSSGPVARFV
SEHPTTKMLALAFLVLIGVALVADGFAFHIPRGYIYFAILFSAAVEFFNVLAKRNRAKPR