Protein Info for TX73_013315 in Rhodopseudomonas palustris CGA009

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 335 to 354 (20 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 432 to 452 (21 residues), see Phobius details amino acids 464 to 490 (27 residues), see Phobius details amino acids 502 to 520 (19 residues), see Phobius details amino acids 526 to 547 (22 residues), see Phobius details amino acids 862 to 879 (18 residues), see Phobius details amino acids 899 to 924 (26 residues), see Phobius details amino acids 962 to 981 (20 residues), see Phobius details amino acids 992 to 1016 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1016 (1013 residues), 1001.5 bits, see alignment E=4.2e-305 PF02355: SecD_SecF" amino acids 337 to 490 (154 residues), 21.8 bits, see alignment E=1.1e-08

Best Hits

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 100% identity to rpa:RPA2575)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>TX73_013315 efflux RND transporter permease subunit (Rhodopseudomonas palustris CGA009)
MASMSDPFIRRPVGTTLLAIGLFLVGMVAYAVLPVAALPNVDFPMIMVQASRPGAAPSVM
ASTVAAPLERRLGEIAGLDQITSTSSLGNTRIQLQFSIGRNVDSAARDVQAAINAAVSDL
PTDLPTLPKFRKFNSAAAPVYILALTSKTMPASAIYDVADTVLAQRISQVPGVGDVTVSG
ADQPAVRIALNPVALSNAGISTDDVRTAIINANPVGPVGSFDGPRLTETLSTNPQMRTAE
QFRSIVIKSDTNGTVRLSDVATVSDATRNARTIAWYNKQPAVIIQITKQGDANVIETVDR
VKALLPELKQWIPAGVDISVLADRTGTIRASVDDMQWTLLATAVLVMAVVLLFLRRLTPT
IAAGVSVPLALAGTCAGMWISGFSINNLSLMALAIAVGFVVDDAIVMIENMYRNLERGMA
PLPAAMEGARQIGFTVLSISLSLVAAFAPLIFMDGLIGRLLREFSLTLTFAIVVSTVVSL
TVTPMICAHYIRAEASPKQTWFDRAVEGTLNRIVGFYAWTLRGVLSVPWLTVVVFIATIA
LTVTLYIKVPKGYFPIDDSGFIIGSTRASADISFQSMRTLQEELADIVMADPAVSGVGSV
LGGGGPGAGGANRGTMFINLKPTAEREGVTTQMVIDRLRRQLSRVAGIRLFMFAAQDLRG
GGRSSESNYQYTLSSPDLDLLQKWAPIVAKRMQTVDGITDVTSDRDDGGLQLTLSIDRTM
ASRLGVRIQDIDNALNNAFSQRQIATIYTQRNQYQVVLEIDPNFQTDPTDLKRIYVDSTS
GDQVPLSAVVRAERGLAALAVAHTQGVPSTTVSFNTLPDVPLQEATANIQRAVDELHMPE
GIRGSFDGNAGDFRATSNKQPLLILAAFIAMYIVLGVLYESLAHPLTIISTLPSAGLGAL
LALLVTGTELSVIAFVGIIMLIGIVKKNGIMMVDFALEAERERGLPSADAIFEACIVRFR
PILMTTLAALFAAIPLVVAVGPGTELRRPLGITIIGGLFVSQVLTLYTTPVIYLLIDRVR
QRRWRRGAPAAVPAE