Protein Info for TX73_013300 in Rhodopseudomonas palustris CGA009

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 21 to 470 (450 residues), 356.9 bits, see alignment E=8.5e-111 PF02321: OEP" amino acids 69 to 259 (191 residues), 82 bits, see alignment E=2.5e-27 amino acids 289 to 468 (180 residues), 105.9 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2572)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT family" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (482 amino acids)

>TX73_013300 efflux transporter outer membrane subunit (Rhodopseudomonas palustris CGA009)
MSTTLRYLGRAARLVVASALVAASGGCILTQDLPDPALDLPNRYKAASRTAVEKPPALDW
WRGFRSAELTQLMEEAQTVNLDVAAAVARIRQADAQARITGAALLPSLSGSGNGSQVKTS
GSNISNTTIAGRRYSTYSSSLSASYEIDFWGKNHDAALAAEETATANRFDRDTVMLTTMA
SVANAYFQVLAAQDRIRTAEGNIKSASRILDAIKQRLKAGTGTDLDVAQQESVLANQRAA
LPPLRLTLAQNVNALATLVARPPESVKIAGGSLTRLSSPRVTPGLPSDLLTQRPDIRRQE
AQLASATANVGSARAQFFPTIQLTAQGGYQSAALASLFTPQATFSNIAAGLTQPIFDGGR
IQGNFDLTQAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQREVVASSRRAFDL
AEQQLRAGTSDIVTVLNTQLTLFQAEDALIQTQLARFQAIVSLFQALGGGWEPKMERTAD
AL