Protein Info for TX73_013245 in Rhodopseudomonas palustris CGA009

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 119 (29 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details amino acids 342 to 360 (19 residues), see Phobius details amino acids 369 to 393 (25 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 90 to 153 (64 residues), 53.6 bits, see alignment E=1.3e-18 PF00528: BPD_transp_1" amino acids 111 to 390 (280 residues), 39.7 bits, see alignment E=2.3e-14

Best Hits

Swiss-Prot: 48% identical to AAPQ_RHIL3: General L-amino acid transport system permease protein AapQ (aapQ) from Rhizobium leguminosarum bv. viciae (strain 3841)

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 100% identity to rpt:Rpal_2833)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>TX73_013245 ABC transporter permease subunit (Rhodopseudomonas palustris CGA009)
MAIDARPPPPQLVAKLRRALGGRSGWKGLLAQVLFVAALFWIGYEIVDNARDNLANQRIA
SGFAFMSHTAGFGVSQTLIPYQESDSYTRVFLVGLINTLVVSVVGIFFATVIGFAVALAR
LSPNWLISRIGGGYVEIVRNLPLLFQILFWYLAVLGSLPSPRQSVSVMDSFFLSNRGIVV
PRLAGEAGLDGFLVALLIAVAAAIVLPLYARRRLFATGKPMRVWPWVLGLLIGLPLIAFV
IVGKPFSLEVPVLRGFNFVGGSRIAPEFVALTLALSTYTAAFIAEVVRAGILSVHKGQME
AGASLGLSRGQTLRLIVIPQAMRVILPPLTNQYLNLTKNSSLAVAIGYPDLFSVFAGTTL
SQTGQAIEVIAITMGVYLLISLVTSALMSLYGWRINRSMGA