Protein Info for TX73_012715 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 51 to 70 (20 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 222 to 247 (26 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 288 to 305 (18 residues), see Phobius details amino acids 311 to 335 (25 residues), see Phobius details amino acids 347 to 370 (24 residues), see Phobius details amino acids 379 to 401 (23 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 363 (347 residues), 131.6 bits, see alignment E=3.3e-42 PF06779: MFS_4" amino acids 76 to 393 (318 residues), 27.8 bits, see alignment E=1.6e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2459)

Predicted SEED Role

"Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>TX73_012715 MFS transporter (Rhodopseudomonas palustris CGA009)
MDHRASRTGLFILGLCFVLSLLGRGLGESFTVFLLPISGSFGWDRAEVVSIYSLTALCTG
LASPLVGRLFDRSGPRVVYTLGMTLLGGALLIAAYAERLWQLQLTVGLCVGLGIAFTGNV
PNSILLGRWFGARLPTAMAVVYSAIGAGVLVMLPIAQLLIDRYGWREAYLILGGAMLILL
VPLSLMPWRRFAAGADAHAQRPAQDADEDGWTLGSAMRHHAFWALFATFFFTAIGMYSIS
AQVVAYLVDAGFTPLQAATAWGFSGVVLVVGMLGVSWLDGVIGRRPSILFSYAISITGLV
LLWLLQWYPNLLLLGGFVICFGSMIGSRGPLITATAMSIFRGRRVGTIYGTISIGSGLGS
AFGSWCGGLLHDLTQSYNPVLGFALVSVVLGMIPFLVVPALRERQ