Protein Info for TX73_012695 in Rhodopseudomonas palustris CGA009

Annotation: M23 family metallopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 58 to 82 (25 residues), see Phobius details PF01551: Peptidase_M23" amino acids 348 to 442 (95 residues), 122.2 bits, see alignment E=4.2e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_2733)

Predicted SEED Role

"Peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>TX73_012695 M23 family metallopeptidase (Rhodopseudomonas palustris CGA009)
MSYRSGHPSAAIHPHGHQQAQAPRPAAPRPARPPQRPAPTGNSYTIAHAGRQVRIGPVLF
WIVVGSIVLLGCWSAATATYFTFRDDVLTRLIARQAEMQYAYEDRIAELRAKVDRTTSRQ
LLDQEQFDQKLEQIMRRQSLLESRAGALSALPDVGVTGSIKPTRTPSFEAETNSRPKPSP
INDTVIFVAPPDREARLESRTSPSALEQAPTQYAKSQGVESVLMRLQTSLDQVERRQVAS
LGAVEESFESRARRMRGVLTDLGLDARGIEASAPRAAVGGPFVPVKQPGANASAFDRQLY
RIYISRSQFERLNRALALVPYRKPVLGEVEFSSGFGVRSDPFLGRPAMHTGLDFRASTGD
PVRATAVGKVVNAGWQGGYGQMVEIDHGNGLSTRYGHLSKIIAKVGQSIQIGQVIGEVGS
TGRSTGPHLHYETRIDGEAVDPQKFLRAGVRLAGAG