Protein Info for TX73_012670 in Rhodopseudomonas palustris CGA009

Annotation: Rne/Rng family ribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1051 TIGR00757: ribonuclease, Rne/Rng family" amino acids 300 to 664 (365 residues), 445.4 bits, see alignment E=1.1e-137 PF10150: RNase_E_G" amino acids 360 to 630 (271 residues), 337.4 bits, see alignment E=6.7e-105 PF20833: RNase_E_G_Thio" amino acids 642 to 721 (80 residues), 88 bits, see alignment 3.8e-29

Best Hits

KEGG orthology group: K08300, ribonuclease E [EC: 3.1.26.12] (inferred from 99% identity to rpa:RPA2450)

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.12 or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1051 amino acids)

>TX73_012670 Rne/Rng family ribonuclease (Rhodopseudomonas palustris CGA009)
MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR
RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMHELPEGETAEQHDAE
YVADHEHTHVEAAPSEPQVSAAAEPVTIEQPAVAEAPAPVEAPQAAASHDETDAHDDDHG
EDSANYAEDAPFPIDEHHEAEDEHEAHDDHVEGEHEVETDSDTEAEAEDDEEEDDEEEAE
EDVVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS
LAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGASRTKPEI
KRDFEYLIRMWETVRDVTLNSQAPKLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYREA
RDFMHMLMPSQVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVS
IDVNSGRSTREHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVER
KLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVAL
QLLRGLEEVLMKGATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVSGQ
QSFVIDRGEQVHTLETAKALLAAQIAASPAPLDEPEDDDGYDFEAEIETDETVGLAEDQG
SEAGESESEGRKRRRRRRRRRSGEPREAAEAGAVGEDGEQPFVSEGVEQVGEADEGDEAG
EDDSDAEARADQGENGERRPRRRGRRGGRRRRGNAEAGENEAGVVGSISDELSPTDEAEA
ADAVADFDGGSPSVQPSFEPAAEAEQPHDAQPHDIAPSEPQHTTATAAPDTSDPSAEDDS
AAKKAARRRSTVREKVSFGASAAASETTAEAAAEVQPEPTAQAEQPATAAPAVEAPAAEA
APQAAAQPAEEPSSAAPRRVGWWSRRFGGGN