Protein Info for TX73_011880 in Rhodopseudomonas palustris CGA009

Annotation: DUF1522 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 892 PF00669: Flagellin_N" amino acids 12 to 118 (107 residues), 38.5 bits, see alignment E=1.8e-13 PF07482: DUF1522" amino acids 344 to 457 (114 residues), 135.5 bits, see alignment E=1.4e-43 amino acids 493 to 599 (107 residues), 139.2 bits, see alignment E=9.3e-45 PF00700: Flagellin_C" amino acids 807 to 891 (85 residues), 26.5 bits, see alignment E=9.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_2540)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (892 amino acids)

>TX73_011880 DUF1522 domain-containing protein (Rhodopseudomonas palustris CGA009)
MSGIVLSNAVRQNLSSLQATADLLATTQSRLSSGKKVNTALDNPTNFFTAASLDSRASDI
NNLLDGIGNGVQILQAANTGITSLNKLVDSAKSIANQALQTVAGYASKSNVSATISGATA
DDLRGTQSFSNAVASSNVVFDGTAGGASTASATDLLGGIAVSIAASAAVTVVGAADNTGL
GSALTIGTSGGSATGASKISDLTNGVTATATGPASGDAITVNGKTITFTTAGTAKADSEG
NYTIGLDQDLTALTKTIDAMNNNTTNASAVTAGKLELHSGTTSPLTISDNAGGAVLAKLG
LGGSTQFKVDTAAATTAAGNISGATQLFNSHGGLSSTAIADGTTLSVNGKTITFKTSDAP
QGNNIASGTGVLGRIGTDGNGNSTIYLGNQSNFTNATVGDVLTAIDLANGVKSASISNGV
ATISTSAGQTASSATAGIVTINSSSGADLNLTGPTDLLKNLGLTTSTGSGPLTLTKQRTT
DGTTLGTLIQDGSTLNVNGHTITFKNAAVPSASASHTGISGNVETDGNGNSTVYLQKGTL
DDVLKAVDLATGVRKATLGNAGAVISTSNGAANSSITSGMLKLSTGLQSDLSITGTGNAM
SALGLTGPSGTDSSFSATRGASAGSLNGKTLSFTSFNGGAGVNVTFGDGTNGTVKSLAQL
NVALAANNMSASIDNATGKLTISTSNDYASHTMGGNEGGVLGGTALTSLTFTTPQAPVAD
VNAQNTRAGLVKQFNDILNQIKTTAQDASFNGVNLLNGDNLKLVFNETGKSTISIQGVTF
DPTGLGLSNLSSGVDFIDNNATNAVLTKLSTASTTLRSQASAFGSNLSVVQARQDFSKSL
INVLQTGSANLTLADTNEEAANSQALSTRQSIAVSALSLANQSQQGVLQLLR