Protein Info for TX73_011855 in Rhodopseudomonas palustris CGA009

Annotation: CHASE3 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 182 to 206 (25 residues), see Phobius details PF05227: CHASE3" amino acids 42 to 174 (133 residues), 84.2 bits, see alignment E=1.3e-27 PF00512: HisKA" amino acids 238 to 302 (65 residues), 28.4 bits, see alignment E=2.1e-10 PF02518: HATPase_c" amino acids 351 to 457 (107 residues), 80.3 bits, see alignment E=2.2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpt:Rpal_2535)

Predicted SEED Role

"InterPro IPR003594:IPR003661:IPR004358:IPR005467 COGs COG0642"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (472 amino acids)

>TX73_011855 CHASE3 domain-containing protein (Rhodopseudomonas palustris CGA009)
MTRKSLSRTFLAPWLLGATLLLFIVIAGALVLNLVRLRDSFAWVQQTNKALLAISAIQQA
VLEAETSERGFLLTGIETYRDSYIRARDALAARLDGLRAVLADNPEQIAHIDELRLLTDM
RMAQLGRVVELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQALLIQRLSKHDRE
SLAAALITACLLILAVGSAAIAAFLLEHQRAVTRQQEADQRLQALQAELLRVARLSTMGE
MSSALAHELNQPLAAVTNYVQGSRRLIEASSHPDKSKISTALDKAAQQTLRAGAVIQRLR
EFVGRGETDKTVESLRAIAEDALALASVLTRDRPVDVALSLDPAFDRVLVDKVQVQQVFL
NLIRNAFEAMRDQRERKLTIGSRLVEDDMVEVVVADSGPGLDALIAERIFQPFATTKADG
MGIGLSISQTIIQAHGGSIKAEPAPGGGTLFRFTLPCSDPIRQHLSFSPAAE