Protein Info for TX73_011690 in Rhodopseudomonas palustris CGA009

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1253 PF13604: AAA_30" amino acids 630 to 776 (147 residues), 90.7 bits, see alignment E=3e-29 PF13245: AAA_19" amino acids 631 to 764 (134 residues), 73.4 bits, see alignment E=6.2e-24 PF01443: Viral_helicase1" amino acids 643 to 763 (121 residues), 27.3 bits, see alignment E=9.3e-10 amino acids 1038 to 1082 (45 residues), 24.4 bits, see alignment (E = 7.2e-09) PF13086: AAA_11" amino acids 721 to 763 (43 residues), 29.1 bits, see alignment (E = 2.5e-10) PF13538: UvrD_C_2" amino acids 1035 to 1081 (47 residues), 43.2 bits, see alignment (E = 8.5e-15)

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2260)

Predicted SEED Role

"RecD-like DNA helicase YrrC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1253 amino acids)

>TX73_011690 AAA family ATPase (Rhodopseudomonas palustris CGA009)
MIEGSRRLPWQHITIRVPWHDGGWNGRACIAPSANTSCLVLRRIASAKRDEQDGVAGKLF
DELAPSELPPCIDERVGFMCDHDLVLTKQHPYKLSSPKTHGHFGETKLRIEAYSAACIPF
GWMLKSNVEGNESKGEFGKATTLRLAYDPEREPDLSFETGWVQDKTNQLIMLDTFFGALQ
PKTSLCFFYAKKTPLSESANRVIIGAARVNGVGEHTEYVYEAPGDLKGVLWERCVRHSLR
PGGEDGFLMPYYEVLATAQADASVPIEDCVAFAPEEQFDAFSYGSEHLGHDGAIASLLAC
AAALRATAKVVEIDVSGALAWIDREIARLWKARGVHPGLGSALSAFGLEHGSLLAHEIVR
VGSREGAVFDGFAFIDGIVKNPSAFPQAEKLGFGSTYRDKWKSLAPLRRQLLDLVARCSL
SADQALRAYQPSQRGVFTEPTSDADLLANPYLLYERDETAAQRIAFGVVDRGVFPADVIR
EIAPLPAQARMTDGIDKRRVRALISDMLEHAVQNEGHTLLPRSWIVSRATGAPLDPRCVV
DEDVIDMVADYLALTLETARTSDDELALKLRRYGASRTAITSAVHKRVGGKRHSIVHKWR
ALVDAVLPPMEAGPEAEVEELARREKSGALEQLACGRFSVLIGPAGSGKTTLLKVLCDLP
EISSGGILLLAPTGKARVRLEEATKRLGEGQTLAQFLQRYERYDGASGRYFRNPKAPREK
GYRSVIVDECSMLTEDQLSALIDAIEGVDRLILVGDPRQLPPIGAGRPFVDICRKLAPSE
ETPQFPKVAPGYAELTIIGRQRGTDRGDVLLARQFSGEPLDAGADEVWEALRSGTLSHVR
TAHWALPSDLEPRLTDEIVRGLALADRSDQRGFELSIGGSEWEGHVLFWERRADQREGGA
AEAAHDWQILSPVRAGAPGVEAINLAIQRRFRNKVRERALTPNAKYPKPAGPQGILWGDK
VINLRNNGRRRTYPRQEKPYVANGDIGIVVGGYKRGKMKFRPRDLEVEFASQPGVKFTYY
AGEFSGEEGTPELELAYALTIHKTQGSQFERTFVVLPRHCRPLSRELLYTALTRHQEELN
LLHEDDIGALRRYSDPSASEIARRMTDLFDAPGPVEVKTVSGPRFLDKHLLHRTSRGEFV
RSKSELAIAEKLNGMGIGYVYEQPLQLDGKTRWPDFTITDEDSGITYYWEHLGMLSDPQY
AARWQIKRSAYLAAGIRPIGEQADGDVLIETREDAGVGLDMVEVDRLARLILR