Protein Info for TX73_011450 in Rhodopseudomonas palustris CGA009

Annotation: helicase-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1172 PF04851: ResIII" amino acids 107 to 272 (166 residues), 52.6 bits, see alignment E=1.6e-17 PF00176: SNF2-rel_dom" amino acids 125 to 369 (245 residues), 58 bits, see alignment E=2.6e-19 PF00270: DEAD" amino acids 127 to 272 (146 residues), 38.1 bits, see alignment E=4e-13 PF09848: SLFN-g3_helicase" amino acids 130 to 238 (109 residues), 22 bits, see alignment E=2.9e-08 PF00271: Helicase_C" amino acids 502 to 605 (104 residues), 72.5 bits, see alignment E=1e-23 PF13020: NOV_C" amino acids 1051 to 1135 (85 residues), 72.7 bits, see alignment 6.5e-24

Best Hits

KEGG orthology group: None (inferred from 53% identity to aac:Aaci_1234)

Predicted SEED Role

"Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1172 amino acids)

>TX73_011450 helicase-related protein (Rhodopseudomonas palustris CGA009)
MARLEEIRNGASVRGIASPQAAQILSVDWIGDQAINVVYRDLNGAVAEAVLYRDDEYRLE
VEVNGRPWSFDGDGALLRLVTEANRIKLAHFFDPYLAIHTSLVDPLPHQISAVYGEMLPR
QPLRFLLADDPGAGKTIMAGLLIKELIARSDLERCLVVAPGSLVEQWQDELGQKFNLEFD
ILTRDMIETSRSGNPFEDRNRLIVRLDVLARNEELQEKLASAREWDLIICDEAHRMSATY
FGGDVKYTKRYQVGQKLGEACRHLLLMSATPHNGKEEDFQLFMALLDGDRFEGRFRDGVH
YADTADMMRRLTKEELLRFDGRPLFPERRAYTVKYQLSELEAALYTAVTEYVRTEMNRVQ
RFAEGDGKKRNNVGFALQILQRRLASSPAAIYQSLKRRRERLENELGEARLAAKGRRAGF
AAPDVNADILKNIEEYGQDEIDDLEDLIATGATTAETVEQLALEVETLKGLETMALGVLR
SGLDAKWTQLNRILDDDLMVDADGNRRKLIIFTEPKDTLHYLVDKVRARLGNPDAVDVIH
GGVSREERRKVIERFMQDRDMLVLIANDAAGEGVNLQRGHLMVNYDLPWNPNKIEQRFGR
IHRIGQTEVCHLWNLVAADTREGEVYARLLEKLEAAREALGGRVYDVLGELFEGVALKDL
LFQAIQYGEQEDVKARLFRQVDGAVDQGHLLELLQRRALTNDTMPEAKVEELRLEMERAE
AQRLQPHHVQSFFVEAFQHLGGKMKRREEGRWEITHVPVRIRERDRQIGTGAPIQKKYER
ICFEKGRINQQPVATFVCPGHPLLEAVISIVREQYEQIMRQGAILVDDLDAGTDLSAVFL
LEHSIQDGLATSAGKPHVVSQKLQFASINKAGEAVNAGIAPHLNLRPATPEEIASVQDVL
HEDWLTTELEKTAVRFATVELAQAHVAEIKARRLPEIEKVEREVRARLKKEINYWDSRAF
ELKEEEKAGKKTRLSWQNAQRRAEDLAERQKRRMDQLEQERFISSQPPRVRGGMVVVPRG
LLDARGIPGAAPAEGAPPPFSADADARRVIELAAMDAVIATERALGNVPSDVSAQKIGYD
IASYDPRTKHLRFIEVKGRVHGADTVMITRQEVITSLHEPDKYILAIVQVEDGTARDPRY
VHGALSDHEPSFEHTAIQFHLARLLERAEAPR