Protein Info for TX73_011425 in Rhodopseudomonas palustris CGA009

Annotation: DEAD/DEAH box helicase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 PF04851: ResIII" amino acids 162 to 334 (173 residues), 65.8 bits, see alignment E=9e-22 PF18766: SWI2_SNF2" amino acids 166 to 387 (222 residues), 32.6 bits, see alignment E=1.3e-11 PF00270: DEAD" amino acids 180 to 334 (155 residues), 38.9 bits, see alignment E=1.6e-13 PF00271: Helicase_C" amino acids 397 to 491 (95 residues), 38.6 bits, see alignment E=2.2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2214)

Predicted SEED Role

"FIG01007161: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>TX73_011425 DEAD/DEAH box helicase family protein (Rhodopseudomonas palustris CGA009)
MLTRATAKAPEQDDLFSEEVTLLFPALLALEGRLLGSAVRQQAVPSALTPCRLKPFTVRR
VSGFETNLKSGETLKIISAKTAASLDADLVLLVPGATTAQSIREALERGEGRWLHPKPID
PAALGAQAMLQRLTGVTASWEDAFHLREGRAATDDKPLYPGLRRPQIGALHAALAHATRS
TDPATIVMPTGTGKTETMLALNARQGFDRLLVVVPTDALREQIAAKFETFGVLKAQSCLD
VSALFPVVTRLTRIPTSIAEVDQIFDSANVIVTTMHIAGRAEPPVQEHMATRASALFIDE
AHHIGARTWASFRGLFAERTPPIPVVQFTATPFREDGRRVDGEFIYTYPLKKAQQEGYFK
PIRFEAVFGLDQLDADQAIIDKLGDVLAADLDAGLNHLAMARCSTIERAKHLHRLYTLAY
PDYRPVIVHSQQSLKERRENLAALRRFDSRIIVCVDMLGEGFDLPELKIAALHDHHKSVA
VTIQFVGRFTRQDPRLGDATVIANTGVDDVDRSLAKLYAEDADWNALVEALSSAKIERQV
RRAEMFKGFSGDLSDIPLQTLEPKMNAVVYRTACDAWDPFQAEELYDAGIYLGMKLNAHK
RVAIFVTRAEEQARWTTAQQAVNVTWDLHMLHWDQASGLLYISSSAKGPFDRLAKAVCGE
TARRVEGEEVFRSLHGFKRLILRNLGLTHHQGRGVRYSMYMGVDVADGLDSAKSQSRIKN
NIFATGFLDGMPASRGCSAKGKFWSSAKVRDLTDWVDWCQDVGRTVNDPSITTDGVFKSA
MRPCQINERPAVPPVAIHWPESLIMQIEERIEISFGDQPVSFTECDIELLDNARTGPLRF
AVRSDDHSAEFEIVFSDGGARYPQRSGPKATIKIGSKIQSLSESFADDSPQIDFGDGSLL
IYSHLYSLPEGETVEPYPVAKIEAWDWSKANIRVESQGTAKRTDSVQRTVIEALLTDPDP
YDVIFDDDGKGEIADVVALRITDSVVSATLFHCKYSGADTPGARLSDLYEVCGQAQKSAR
WRDRPNRMLQHMLKREQKRRDRGLSSRIETGSAAAIKKLKAGWQDYRFEYDVRIVQPGLS
RKAIGEEGLHLLAGVETYLLETRGMRLRVIGSD