Protein Info for TX73_011270 in Rhodopseudomonas palustris CGA009

Annotation: NADPH:quinone oxidoreductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 PF08240: ADH_N" amino acids 28 to 90 (63 residues), 50.3 bits, see alignment E=2.9e-17 PF00107: ADH_zinc_N" amino acids 152 to 269 (118 residues), 84.2 bits, see alignment E=1.2e-27 PF13602: ADH_zinc_N_2" amino acids 185 to 322 (138 residues), 58.1 bits, see alignment E=3e-19

Best Hits

KEGG orthology group: K00344, NADPH2:quinone reductase [EC: 1.6.5.5] (inferred from 100% identity to rpa:RPA2184)

Predicted SEED Role

"bll5605; putative quinone oxidoreductase (EC 1.6.5.5)" (EC 1.6.5.5)

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.5

Use Curated BLAST to search for 1.6.5.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>TX73_011270 NADPH:quinone oxidoreductase family protein (Rhodopseudomonas palustris CGA009)
MPKAVVCRELGPPESLRLEEIERKGLKPGDVRIAIRAAGINFPDILMCAGEYQLKPELPF
IPGMEAAGEIIELGADVTSVKLGDRVIVKLRFGAYAEEVVAAASQLTPAPANFDFAEAAT
YLAGHGTAWHGLVERGQLQPGEVLLVHGAGGGVGLAAVEVGKYLGATVIAAASSEEKLAV
ARQRGADHGLLYGAEPFKDAVKRITEGRGADVVFDPVGGQIFEDSVRCINWGARLLVVGF
TGGIGLARTNLILMKGASVIGVRAGEAVRRDPARGEQRTAKLLELAAKGVLRPNVSHRLP
LSQWAPAMRLLIDRKAIGRVALLP