Protein Info for TX73_011155 in Rhodopseudomonas palustris CGA009

Annotation: autotransporter domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR04393: T5SS/PEP-CTERM-associated repeat" amino acids 54 to 100 (47 residues), 34 bits, see alignment 2.2e-12 TIGR01414: outer membrane autotransporter barrel domain" amino acids 460 to 923 (464 residues), 151.1 bits, see alignment E=5e-48 PF03797: Autotransporter" amino acids 654 to 903 (250 residues), 215.5 bits, see alignment E=5.8e-68

Best Hits

KEGG orthology group: K01423, [EC: 3.4.-.-] (inferred from 100% identity to rpa:RPA2162)

Predicted SEED Role

"FIG01008647: hypothetical protein"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (923 amino acids)

>TX73_011155 autotransporter domain-containing protein (Rhodopseudomonas palustris CGA009)
MKKQLLLTTSLAPLLAVGVLGSAPALADCTISGNTTGLTCSSGSISSSPSTAVTVGDGAG
ANGSVTLSGAGASWTDTNEVSVGRDGGVGSINVSNGAALTTRRLALSTGIWEAGSGGNGS
LVVTGPQTVWTSTGGVDIGRTVGAIGSLTVSNGAAAYIRNTGIYTGAGAEITIRDAGTHV
EIGDPNNSSAAAWLSPSGGTVNVLSGAYLYASGIYVGSEGSNLTTMNISGRGTVVDTPVR
IYVGGQNGSRNVDPMNGNGILNVTDGAVVTSGTVGAGMDPLSQGIINVSGNGSRLWAKAD
SAQNILGNVYAGYNGNGTVVVSSGAELKADNEVRIGYDTQGQGVLAIGAASGQAAAAPGT
ITAPRIVFGSGTGQLVFNHTSSNYTLASDIVGNGSIKAIAGRTTLTGDSSQFTGTMEVSG
GILTMTGVIGAVMAVESGAVLTGSGTVGGVNAQTGATVAPGNSPGTLTVIGNYQQAAGST
YNAELVPGSTVSDRIAVGGTATIAPGAILKLTKYGAAPYALDARYTVLTAAGGINGTYIL
TGDTSVSAFYSLIASYDPNNVYLQSVQTRGFTDAALTANQRATAGVLQTMGNGGGLRAGV
AASPTDTAARVAFDQLSGEAFASTKTALLDDSRFVREATSLQVQSALRGPDTAVWARAYG
SWAKADGNGNAADVRRNAGGVLFGADGELFNALRLGVVGGYGSTSISLDGGRGSVSGDTY
SVGVYGGRAWNALALSFGANHAWHNLSSSRTVALTGFSDRLTADYNARTTQVYGDVGYTI
ELGRAALQPFAGLAYVNLDTSSLTERGGAAALRSAGDNVDATFSTLGLRANGALTLGTTA
VTASGMVGWRHTMNNVVPTVTNAFSTGNAFTVSGIPLAKDVAVFEAGLGTALNPSTALSV
NYSGQVGSSISDHGVRANLRVTF