Protein Info for TX73_010860 in Rhodopseudomonas palustris CGA009

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1696 transmembrane" amino acids 184 to 204 (21 residues), see Phobius details amino acids 877 to 901 (25 residues), see Phobius details amino acids 1036 to 1053 (18 residues), see Phobius details PF07714: PK_Tyr_Ser-Thr" amino acids 43 to 248 (206 residues), 44.4 bits, see alignment E=5.4e-15 PF00069: Pkinase" amino acids 45 to 247 (203 residues), 49.9 bits, see alignment E=1.2e-16 PF13191: AAA_16" amino acids 290 to 479 (190 residues), 143 bits, see alignment E=5.2e-45 PF13185: GAF_2" amino acids 1305 to 1444 (140 residues), 36.3 bits, see alignment E=2.5e-12 PF13492: GAF_3" amino acids 1306 to 1446 (141 residues), 28.1 bits, see alignment E=9.7e-10 PF01590: GAF" amino acids 1306 to 1444 (139 residues), 48.2 bits, see alignment E=6.6e-16 PF00512: HisKA" amino acids 1476 to 1538 (63 residues), 29.7 bits, see alignment (E = 2.2e-10) PF02518: HATPase_c" amino acids 1587 to 1694 (108 residues), 70.7 bits, see alignment 5.4e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2107)

Predicted SEED Role

"FIG01006154: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1696 amino acids)

>TX73_010860 AAA family ATPase (Rhodopseudomonas palustris CGA009)
MKQIDAPMELVRREGGLSVFRRRADGMTPPNLVVLADLDDPPAAQQLTREFALTRDLDAD
YVLRPRELVTIDARTALIIDDHDAQPLSEKLGQPLPVGRLLRWGIGIAQALGHIHGKGLI
HRNLSPDAVWIDPSDRVWLTCLACASRLNRERPDMFGTEIGSPTYMSPEQTGRLNRSIDA
RSDLYVFGILLYQMLASGSLPFFASNPGQWIHYHIARKPNPLPNASGATSAIERIALRLL
EKSADDRYQTAIGVERDLRACLTAWETYGTTAGVHLTEHDAAGIVRMPEKLYGREGEINA
ILSAYHRAASTGTTEWVLISGYSGAGKSSVVSELRKSLAPTNGWFIAGKFDQYKRDIPFA
TLAQAFRSLVRQILGLDCGELDQWRTALQEAVGEHGELMVNLVPDLALVIGEQPPLPDLP
PQESKSLFEAVLARFLAAIARAEHPLVLFLDDLQWLDKATSEFLVRLAQNIDTRHLLLVG
AYRDNEVDDNHPLSCALAEIRQSVSHIEEIRLASLSADDICALVSDVLRAEPDHVAPLAA
LIHRKTGGNPFFAIQFFSSLVDEQLVSFHLLHHEWIWNIELIDEKGFTDNVVDLMSRKLH
RLPSRTQDVLQTFSTLGMTAEACLLAQLRDITVEDVHEALQDLVANELLLRTEDDYRFVH
DRVREAAYRLIDPSDLPTEHLAIARHLANSVPTSSDALFSIANHYNLGAPLLSSRSEMVL
AAGYNLKAGRAAKKAIAYSSARVYLAAALTLLGKDRWAEQPDLAYDVEYQLAECEFLTGA
LTEAEERLRQLVSKARGDVAIAAVVALQITLYTAMDRSDLAIEVCLAYLRNVGIVWSRHP
DRQEASAEYQLLTQRIGSLSIESLLDLPTSTDRSRSAALSVMTAALAPAFFTDLNLVCLL
LSRMANLSIQHGNTDASALAYAYLGMVVGPCFGDYATALKFGDLGLRLVETRGLNQYKAR
VHLTYGAHVLPWARALNEAQPYLRRAFEEANETGDLTYAGFSSCTLITNRLSAGDPLDEV
ELEAGARLALMKRAKFGLIVYIITTQLQFLRSLRGDTVALGSLSSEGFDEERFASELAAN
RSLDIALCWFWIRKMQALYFAGDYVAAFAALRKAQPLLWSTVGHHEYSIYYFYVGVISAA
NMDLATPPAPHAELAELLADAHRQMATWEVHNPENYRGARALLEAEIARLQHRPFEALRL
YQQAISSSHRGRVSQVEAIAHELAACFCRKQGLDTAYHAHLAKARDGYQQWGAFAKAAQI
DRLYPDLAAALSASAQVPSSIAESFDLAAVLRTSEAVSNESGVPRLMETLMTLVLEHAGA
QRGLLILPQDDDLSIRAEARTAEAGIEVVLRDDIASTDEVPRSIVNLVARTGEAITIDDA
LGSRFAGDPYVARLKARSILCLPLMKRSKLIGIIFLENNLTAGVFTPGKLSVLKLLSSQA
AMSLKNAFLEEKDALVDALQKSQSELMRMSRLTAIGELVISIAHEINQPLTAIITNADVC
LRWLNNEQPSIAEAKNAASRVIENGRRAANVVQTIRGLAVKSTSQMAPVDINEVAREILS
IIQSELRHHSIHLETRLDSGDAVVLGNKVQLQQVLLNLTMNAVESMATIEGRRVLTVASD
TNDPGSVTVSVTDTGLGFDEDRIDQLFEAPVTTKPQGMGMGLSISKSIIDAHGGRLLATS
LKPHGARFQFTLPRSS