Protein Info for TX73_010815 in Rhodopseudomonas palustris CGA009

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 92 to 115 (24 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 176 to 179 (4 residues), see Phobius details amino acids 181 to 181 (1 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 271 to 290 (20 residues), see Phobius details amino acids 302 to 320 (19 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details PF05977: MFS_3" amino acids 17 to 531 (515 residues), 595.4 bits, see alignment E=8.9e-183 PF07690: MFS_1" amino acids 31 to 375 (345 residues), 122.6 bits, see alignment E=1.8e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2099)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (549 amino acids)

>TX73_010815 MFS transporter (Rhodopseudomonas palustris CGA009)
MSSVEGDQQTAAPPRPSSWAAFHHIAFTVVWTATVVSNVGTWMFNAASGWLMTSLEADPL
QVALVQVASNLPIFLFAIPAGALADIVDKRKFLIVVQIVLTLFASASAALVWFGLMTPSQ
LLLFTFLLGAGAAFAAPAFQSIVPDLVPKQDLASAVASNGVGINISRAIGPALGGVAIGS
LGIAAPFWINAVSNLAVIAALIWWRPANSRSGSLPPERLIEALVTGIRHARHNTELRATL
VRAVAFFFFASAYWALLPLVARSRIAGGPELYGILLGAVGAGAIGGALVLPKLKAALGPD
RLVAAGTLGTALCLVMLGLARQVELAVAACLLAGISWIAVLASLNVSVQVVLPDWVRGRG
LAMFVTVFFGAMTAGSALWGQIASSFGLPIAHFAAAAGAVLGIVATWRWKLKAGADVDLS
PSMHWPTPIVSIDAEPDQGPVLITVEYRIAKGHRDAFLSAVRHLSRQRRRDGAYQWGVFE
DAADPGRFVETFKVASWLEHLRQHERVTNADRVLQEQIRLFDAEPKVTHLIASPHGHVKR
QPMLASQTP