Protein Info for TX73_010620 in Rhodopseudomonas palustris CGA009

Annotation: 4Fe-4S binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 754 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 432 to 451 (20 residues), see Phobius details amino acids 464 to 485 (22 residues), see Phobius details amino acids 505 to 526 (22 residues), see Phobius details amino acids 572 to 592 (21 residues), see Phobius details amino acids 612 to 631 (20 residues), see Phobius details PF04205: FMN_bind" amino acids 72 to 147 (76 residues), 30.6 bits, see alignment E=4.5e-11 PF12801: Fer4_5" amino acids 509 to 555 (47 residues), 48.8 bits, see alignment 5.5e-17 amino acids 613 to 652 (40 residues), 21.9 bits, see alignment 1.4e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2060)

Predicted SEED Role

"Nitrous oxide reductase maturation protein NosR" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (754 amino acids)

>TX73_010620 4Fe-4S binding protein (Rhodopseudomonas palustris CGA009)
MTLALAFVGGAQLAQAAGRVGEYLSRATPSELVPGADRFGPLQGDPALAPAYQGDRLLGF
AYLNSDFVNSTGYSGKPIQMLIGIDPNGVITGLKLVDHKEPIVLVGIPEAKILGAVNKLI
GADLAPVARGKAAAPQVDIVSGATVTVLVIGDSIVRSATKLIKSGRIGGGQGEVAQAPPV
SKTIDLGKSEVRDWESLVGDGSVRRLLLTNVDINQAFEKSGNREAAVRPEPGEPTDTFIE
LYTADVGVPTIGRSLLGDDGYQRLKARLQPGQQALVIAGHGTYSFKGSGYVRGGIFDRIE
LIQDGNSIRFRDRDHTRLGDLAAEGAPDFPEIGLFLVPSEFGFDPTEPWSLQLLVQRVIG
ARDKAFLTFDLGYTLPETYIKRVQRAVTVSDTSAPAAASAPGAAATAASPSAADADAAQD
EPLWMRIWRGDLVRIGILGVALITLTLIFFFQNQLVRRPAVYVWVRRAYLTFILVWLGWY
ANAQLSVVNVLTFTNSLITGFSWDYFLSAPLIFVLWASVAVALLFWGRGPFCGWLCPFGA
LQELLNNVAKALKVPQFEVPWSLHERLWPIKYIVFLGLFGLSIYSTAAAEHFAEIEPFKT
SIILKFAREWPFVLYAATLLAAGLFVERFFCRYLCPLGAALAIPGRIRMFEWLRRWPECG
SPCQRCAKECPVQAIHPEGHINVNECIYCMHCQELYFDDHRCPHMIQLRLKREKREALSS
TSMRGGKGPATVILAGGKPLAAQPVGVIEPPPAP