Protein Info for TX73_010500 in Rhodopseudomonas palustris CGA009

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00106: adh_short" amino acids 2 to 197 (196 residues), 161.4 bits, see alignment E=2.9e-51 PF08659: KR" amino acids 4 to 170 (167 residues), 49.5 bits, see alignment E=7.3e-17 PF13561: adh_short_C2" amino acids 8 to 197 (190 residues), 113.2 bits, see alignment E=2.2e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2038)

Predicted SEED Role

"InterPro IPR002198:IPR002347 COGs COG1028"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>TX73_010500 SDR family oxidoreductase (Rhodopseudomonas palustris CGA009)
MKCVVVTGVSSGIGHAIARMLLDKGFRVFGSVRKHSDAERLIVELGAGFTPLVFDVTDET
AIRAAADEVRRALDGETLAGLVNNAGIAVAGPVLDLPADEFRRQFEVNVIGPILATQAFG
PLLGTDRSLRGAPGRIVMMSSIAGKFGNPLMAAYSASKHALNGLSDGLRRELMLFGIDVV
VIMPGAVKTPIWGKAEREDVSRFANSPFYPALQKLRALLPEMDESGLPPETIAQHVYDAL
TAPSPNAHDVITPGPLQFWLSTKLPPRWIDKIVAKRLGLKPAKS