Protein Info for TX73_010480 in Rhodopseudomonas palustris CGA009

Annotation: EamA family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 33 to 50 (18 residues), see Phobius details amino acids 55 to 72 (18 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 262 to 281 (20 residues), see Phobius details PF00892: EamA" amino acids 8 to 128 (121 residues), 47 bits, see alignment E=1.5e-16 amino acids 144 to 278 (135 residues), 40.7 bits, see alignment E=1.4e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to rpa:RPA2034)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>TX73_010480 EamA family transporter (Rhodopseudomonas palustris CGA009)
MKPADTALAVLVAVIWGLGFVFTRYALTEMSPSLLNLLRFAITALPCLLLPRPKLAWPVW
IGISLLLVWQYLTQTYGIAHGVPAGLTAVIVQSQALFTVGFAALLLGERPTGAQLAGIAV
AACGLLMICLTVGYDFTVLAFAVTMTAPISFAFTNLLLRRARDVPMLDLFAWISLASLPP
LALAAWVSDGVPAIIQSLTHLSPGVMGAMLALSIGSTTIGYWIWGRLLHAYSAAQVVPFA
LLVPFIGAGASSLVFGETFGPLRLAGMLIVVAGLAIMLLFGRARPPLPEVG