Protein Info for TX73_010020 in Rhodopseudomonas palustris CGA009

Annotation: oxalate/formate MFS antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details TIGR04259: oxalate/formate antiporter" amino acids 21 to 428 (408 residues), 690.4 bits, see alignment E=3.6e-212 PF07690: MFS_1" amino acids 29 to 274 (246 residues), 93.2 bits, see alignment E=7.7e-31 amino acids 273 to 417 (145 residues), 39.6 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: K08177, MFS transporter, OFA family, oxalate/formate antiporter (inferred from 100% identity to rpt:Rpal_2154)

Predicted SEED Role

"oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>TX73_010020 oxalate/formate MFS antiporter (Rhodopseudomonas palustris CGA009)
MTDTVHGVAAAQTRRVSESYRWTQLAIGVGAMVMIANYQYGWTFFVPDIQKTFGWDRASI
QWAFTLFVLFETWLVPIEGWFVDKYGPRLVVLIGGILCALGWAINAQATTLSGFYLGMIV
AGIGAGAVYGTCVGNALKWFPDKRGLAAGLTAAGFGAGSALTVAPIQAMIRDSGFQTTFM
YFGLGQGIVIVFLSLLLLAPKPGQVPSPTRNANVFQTRRDYRPTEVLRQPVFWLMYFMFV
IVGAGGLMVTANLKPIAADWKIADTPVTLMAMTMTAVTFAATFDRILNGLTRPFFGWISD
KIGRENTMFIAFGLEGIGIYALYALGQDPVWFVLLSGLVFFAWGEIYSLFPSTCTDTFGS
KFAATNAGLLYTAKGTAALLVPFANSLQQSSGSWDRVFLIAAAANILASLLALLVLKPWR
RSVVAKSEMV